<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">NHESS</journal-id><journal-title-group>
    <journal-title>Natural Hazards and Earth System Sciences</journal-title>
    <abbrev-journal-title abbrev-type="publisher">NHESS</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Nat. Hazards Earth Syst. Sci.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1684-9981</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/nhess-18-2489-2018</article-id><title-group><article-title>A comparison of a two-dimensional depth-averaged flow model<?xmltex \hack{\break}?> and a three-dimensional RANS model for predicting tsunami inundation and fluid forces</article-title><alt-title>A comparison of 2-D and 3-D tsunami inundation models</alt-title>
      </title-group><?xmltex \runningtitle{A comparison of 2-D and 3-D tsunami inundation models}?><?xmltex \runningauthor{X. Qin et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Qin</surname><given-names>Xinsheng</given-names></name>
          <email>xsqin@uw.edu</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Motley</surname><given-names>Michael</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>LeVeque</surname><given-names>Randall</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1384-4504</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Gonzalez</surname><given-names>Frank</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Mueller</surname><given-names>Kaspar</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Department of Civil and Environmental Engineering, University of Washington,<?xmltex \hack{\break}?> More Hall Box 352700, Seattle, WA 98195, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Applied Mathematics, University of Washington, Seattle, WA 98195, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Earth and Space Sciences, University of Washington, Seattle, WA 98195, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>School of Computer Science and Communication, KTH, Royal Institute of Technology, 100 44 Stockholm, Sweden</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Xinsheng Qin (xsqin@uw.edu)</corresp></author-notes><pub-date><day>18</day><month>September</month><year>2018</year></pub-date>
      
      <volume>18</volume>
      <issue>9</issue>
      <fpage>2489</fpage><lpage>2506</lpage>
      <history>
        <date date-type="received"><day>19</day><month>May</month><year>2018</year></date>
           <date date-type="rev-request"><day>1</day><month>June</month><year>2018</year></date>
           <date date-type="rev-recd"><day>29</day><month>August</month><year>2018</year></date>
           <date date-type="accepted"><day>30</day><month>August</month><year>2018</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://nhess.copernicus.org/articles/.html">This article is available from https://nhess.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://nhess.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://nhess.copernicus.org/articles/.pdf</self-uri>
      <abstract>
    <p id="d1e141">The numerical modeling of tsunami inundation that
incorporates the built environment of coastal communities is challenging for
both 2-D and 3-D depth-integrated models, not only in modeling the flow but
also in predicting forces on coastal structures. For depth-integrated 2-D
models, inundation and flooding in this region can be very complex with
variation in the vertical direction caused by wave breaking on shore and
interactions with the built environment, and the model may not be able to
produce enough detail. For 3-D models, a very fine mesh is required to
properly capture the physics, dramatically increasing the computational cost
and rendering impractical the modeling of some problems. In this paper,
comparisons are made between GeoClaw, a depth-integrated 2-D model based on
the nonlinear shallow-water equations (NSWEs), and OpenFOAM, a 3-D model based
on Reynolds-averaged Navier–Stokes (RANS) equation for tsunami inundation
modeling. The two models were first validated against existing experimental
data of a bore impinging onto a single square column. Then they were used to
simulate tsunami inundation of a physical model of Seaside, Oregon. The
resulting flow parameters from the models are compared and discussed, and
these results are used to extrapolate tsunami-induced force predictions. It
was found that the 2-D model did not accurately capture the important details
of the flow near initial impact due to the transiency and large vertical
variation of the flow. Tuning the drag coefficient of the 2-D model worked
well to predict tsunami forces on structures in simple cases, but this
approach was not always reliable in complicated cases. The 3-D model was able
to capture transient characteristic of the flow, but at a much higher
computational cost; it was found this cost can be alleviated by subdividing
the region into reasonably sized subdomains without loss of accuracy in
critical regions.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\allowdisplaybreaks}?>
<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
<sec id="Ch1.S1.SS1">
  <title>Scope and motivation of the study</title>
      <p id="d1e158">For many years, researchers have been working on different numerical models
that can predict tsunami behavior. Tsunami prediction generally requires
modeling at a wide range of spatial scales, including (from large to small
scale) offshore wave propagation, beach run-up, inland inundation, and impact
on individual structures.</p>
      <p id="d1e161">Due to the large differences in scale for the different processes, most
tsunami models solve two-dimensional depth-integrated equations, e.g., the
nonlinear shallow-water equations (NSWEs) or some form of Boussinesq wave
equations, to predict tsunami behavior, using computational grids that vary
several orders of magnitude in spatial resolution, from several kilometers
far from the shoreline to 10 m inland. The NSWEs are often used in the
nearshore and inundation zone, since they can handle nonlinearities that
arise in very shallow<?pagebreak page2490?> water and can be adapted to deal robustly with wetting
and drying. However, it is not clear whether these equations are adequate to
properly model fully three-dimensional turbulent flow, particularly at the
scale necessary to determine tsunami impact and corresponding tsunami-induced
forces on individual structures.</p>
      <p id="d1e164">It would be preferable to solve the three-dimensional Navier–Stokes equations
with a proper turbulence closure. However, this is still extremely expensive
computationally relative to two-dimensional models, and only practical for
detailed simulations over small spatial regions.</p>
      <p id="d1e167">Although such modeling is challenging, the latest version of ASCE 7-16 (American Society of Civil Engineers) in the
United States has a chapter for tsunami loads and effect for coastal
structures. The provision requires site-specific inundation modeling and
analysis be performed for all vertical evacuation structures. One of such
examples is the design of the first vertical evacuation structure in the
United States <xref ref-type="bibr" rid="bib1.bibx3" id="paren.1"/>, the site-specific inundation analysis of
which was conducted by <xref ref-type="bibr" rid="bib1.bibx13" id="text.2"/>.</p>
      <p id="d1e177">Given the challenges in tsunami inundation modeling, and the necessity of
doing so for coastal structures design and tsunami hazard mitigation, the
goal of this paper is to (1) study the characteristics of two different types
of models when applied to tsunami inundation modeling (with an explicitly
represented constructed environment); (2) show some guidance for modeling
tsunamis or other flooding events in similar constructed environments; and,
by showing the pros and cons of both models, (3) provide some insight to tsunami
hazard researchers, coastal structure designers, and relevant government
agencies.</p>
</sec>
<sec id="Ch1.S1.SS2">
  <title>Previous work</title>
      <p id="d1e186">Before introducing the two numerical models used in the current study, a brief
review of previous research involving different types of models is given
below.</p>
      <p id="d1e189">The two-dimensional depth-integrated equations are the most widely used
tsunami models for their simplicity and computational efficiency.
<xref ref-type="bibr" rid="bib1.bibx33" id="text.3"/> simulated the 2011 Tōhoku tsunami by solving the 2-D NSWE
with dynamically adapted spatial resolution that varied from 250 m in
flooded areas nearshore up to 250 km offshore. The model accurately
predicted long-distance wave and coarse-scale flooding; the initial surface
elevation was determined from a source model based on seismic inversion (as
opposed to inversion of DART buoys and tidal gauge time series). This also
showed that an accurate and consistent model of tsunami wave propagation can
sometimes be constructed using only seismic wave inversion. <xref ref-type="bibr" rid="bib1.bibx46" id="text.4"/>
used the Method of Splitting Tsunamis (MOST) model to simulate the same
tsunami event. The MOST model solves the shallow-water equations in spherical
coordinates with numerical dispersion. Their results demonstrated that it may
be possible to forecast near-field tsunami inundation in real time.
<xref ref-type="bibr" rid="bib1.bibx15" id="text.5"/> presented an NSWE model that can simulate storm waves
propagating in the coastal surf zone and overtopping a sea wall. They found
that waves overtopping a vertical wall may be approximately modeled by
representing the wall as a steep slope and that the overtopping rate is
sensitive to the bottom friction and the minimum friction depth. The
two-dimensional NSWE model of wave run-up and overtopping by
<xref ref-type="bibr" rid="bib1.bibx16" id="text.6"/> features an adaptive mesh refinement (AMR) algorithm. Their
model can accurately reproduce 1-D and 2-D wave transformation, run-up, and
overtopping in physical experiments. Their modeling of seawall overtopping by
off-normal incident waves showed that there can be more flooding in such a
situation than at normal incidence. <xref ref-type="bibr" rid="bib1.bibx20" id="text.7"/> simulated long-wave
run-up obstructed by an obstacle and concluded that the obstacle can help
reduce run-up and maximum overland velocity if the wave is highly nonlinear
(with a ratio of wave height to shelf water depth <inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula>). The
sensitivity study also showed that in cases of breaking waves the Boussinesq
model was more accurate than the nonlinear shallow-water equations in terms
of wave run-up (maximum differences up to 10 %). For nonbreaking long
waves, differences between the two were negligible. <xref ref-type="bibr" rid="bib1.bibx38" id="text.8"/> developed
a high-order adaptive time-stepping total variation diminishing (TVD) solver for a fully nonlinear
Boussinesq model and validated it against a series of laboratory experiments
for wave shoaling and breaking and a suite of benchmark tests for wave run-up.
The results showed that the model was able to accurately model wave shoaling,
wave breaking, and wave-induced nearshore circulation. With a Boussinesq model,
<xref ref-type="bibr" rid="bib1.bibx21" id="text.9"/> simulated overtopping of levees of the Mississippi
River–Gulf Outlet (MRGO) during Hurricane Katrina at four characteristic
transects along the <inline-formula><mml:math id="M2" display="inline"><mml:mn mathvariant="normal">20</mml:mn></mml:math></inline-formula> km long stretch of the levees. The predicted
overtopping rates agreed well with the observed data.</p>
      <p id="d1e231">As computing power increases, it becomes possible to model the tsunami run-up
process by solving three-dimensional Navier–Stokes equations with a proper
turbulence closure. <xref ref-type="bibr" rid="bib1.bibx8" id="text.10"/> solved three-dimensional
Reynolds-averaged Navier–Stokes (RANS) equations to simulate wave run-up on
an conical island and compared different turbulence closure models including
<inline-formula><mml:math id="M3" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M4" display="inline"><mml:mi mathvariant="italic">ϵ</mml:mi></mml:math></inline-formula>, RNG (renormalization group methods;
<xref ref-type="bibr" rid="bib1.bibx49" id="altparen.11"/>), and LES (large-eddy simulation). Their results
showed that LES and RNG <inline-formula><mml:math id="M5" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M6" display="inline"><mml:mi mathvariant="italic">ϵ</mml:mi></mml:math></inline-formula> are similar and more accurate than
<inline-formula><mml:math id="M7" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M8" display="inline"><mml:mi mathvariant="italic">ϵ</mml:mi></mml:math></inline-formula> is worse than those two. <xref ref-type="bibr" rid="bib1.bibx47" id="text.12"/> solved
incompressible RANS equations with a transitional variant of the standard
two-equation <inline-formula><mml:math id="M9" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M10" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> turbulence closure to study boundary layer
flow induced by tsunami-scale waves. Their results indicated that the
boundary layer generated by a tsunami is both current-like due to the long
duration and wave-like due to its unsteadiness. The study also indicated that
an existing expression for maximum bed shear stress under wind wave scale can
be reasonably extrapolated to full tsunami scale. <xref ref-type="bibr" rid="bib1.bibx22" id="text.13"/>
investigated wave<?pagebreak page2491?> breaking in the surf zone by solving the RANS equations
with a <inline-formula><mml:math id="M11" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M12" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> turbulence model. They found that the volume-of-fluid
method could be used successfully to simulate wave breaking and that,
although some instabilities occurred in applying the RANS equations, they can
be eliminated by an ad hoc modification of the turbulence model. Other
relevant studies include <xref ref-type="bibr" rid="bib1.bibx7" id="text.14"/>,
<xref ref-type="bibr" rid="bib1.bibx26" id="text.15"/>, and <xref ref-type="bibr" rid="bib1.bibx17" id="text.16"/>, which model landslide
generated tsunamis and tsunami-induced scours around coastal structures.</p>
      <p id="d1e327">The prediction of tsunami impact on individual structures is also important
because it provides guidance on designing coastal structures in tsunami
inundation zones. The two-dimensional depth-integrated model may not work
properly for these scenarios since the problems are more three-dimensional
with large variation in the vertical direction and with transient and
turbulent flow impacting the structure. In these cases, a three-dimensional
model that solves the Navier–Stokes equation may give much better results.
Researchers at the University of Washington (UW) modeled a series of “dam break”
experiments by solving the 3-D RANS
equations for bore-type impact of a wave on a series of <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula>-scale model
girder bridges to assess the 3-D effects on bridge skew
<xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx48" id="paren.17"/>.</p>
      <p id="d1e346">The scale of modeling tsunami inundation inland with an explicitly
represented constructed environment lies between that of modeling the
large-scale tsunami wave propagation offshore and the small-scale tsunami
impact on individual structures. This process is actually even more
challenging to model since, for two-dimensional depth-integrated models,
inclusion of the constructed environment increases the complexity of the
topography, and the flow begins to have more variation in the vertical
direction; while for the three-dimensional model that solves the
Navier–Stokes equations, a fine mesh needs to be generated around each
individual structure, which dramatically increases the number of cells in the
computational domain.</p>
      <p id="d1e349">Some researchers have tried to model this process with two-dimensional
models. <xref ref-type="bibr" rid="bib1.bibx30" id="text.18"/> used the numerical code NAMI DANCE to
investigate hydrodynamic parameters in tsunami inundation zones with
idealized structures – three rows of 20 blocks representing three-story
concrete buildings. The code solved the NSWE using a finite-difference
technique in a staggered leapfrog scheme. The effect of wave period, wave
shape, protection structures, building layout, and Manning's coefficient are
discussed. Some major conclusions included that the coastal protection
structures like seawalls and breakwaters have very limited effect if the
waves are able to overtop them and that it is preferable to use different
Manning's coefficients for the sea, land, and buildings if more accurate
values of hydrodynamic parameters are needed, albeit at the expense of more
computational time. Similar conclusions on the Manning's coefficient were
presented by <xref ref-type="bibr" rid="bib1.bibx31" id="text.19"/>. They simulated tsunami inundation in part of
Seaside, Oregon, and compared flow parameters with their physical experiment.
The comparison showed that the flow parameters were sensitive to the friction
coefficient, especially for the momentum flux, which is proportional to
tsunami loads on structures. For instance, decreasing the friction
coefficient by a factor of <inline-formula><mml:math id="M14" display="inline"><mml:mn mathvariant="normal">10</mml:mn></mml:math></inline-formula> increased the predicted momentum flux by
<inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mn mathvariant="normal">208</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula>. <xref ref-type="bibr" rid="bib1.bibx29" id="text.20"/> compared three different tsunami inundation
models to evaluate tsunami impact on coastal communities: (1) the
Constant Roughness Model (CRM) which uses a constant friction coefficient, does not
include the constructed environment, and assumes that all buildings are not
able to withstand the tsunami; (2) the Topographic Model (TM), which includes the
constructed environment by incorporating building shape and height
information into the topography; and (3) The Equivalent Roughness Model (ERM), which
represents the building by using a different equivalent friction coefficient
at the site of a building on the original topography (with only terrain
information but not building height). Both the TM model and the ERM model
gave more reliable prediction than the CRM model did, which confirmed the
importance of taking the constructed environment into consideration.</p>
      <p id="d1e379">However, few researchers have tried to use a three-dimensional model for
inundation in a complex built environment. <xref ref-type="bibr" rid="bib1.bibx39" id="text.21"/> applied a 3-D LES
model with two-phase flow to simulate inland tsunami
inundation in a coastal city with hundreds of buildings and compared the
prediction with experimental measurements. However, a fairly coarse mesh was
used on land, and each building had only three to five mesh cells along its edge in
the along-shore or cross-shore direction, so that the resulting agreement in
flooding depth can only be considered qualitative. <xref ref-type="bibr" rid="bib1.bibx34" id="text.22"/> used 3-D
RANS equations to predict tsunami
inundation process and loads on individual buildings in part of Seaside,
Oregon, and demonstrated that the whole part can be modeled using subsections
with proper width without loss of accuracy in areas of interest.</p>
      <p id="d1e388">In this paper, the results from a two-dimensional NSWE model and a 3-D
Navier–Stokes model are presented for the test case of flow through a scale
model of a portion of Seaside, Oregon. Two open-source models are used: the
2-D GeoClaw software from Clawpack <xref ref-type="bibr" rid="bib1.bibx9" id="paren.23"/>, which is widely used for
modeling tsunamis (both global propagation and local inundation), and the 3-D
OpenFOAM software <xref ref-type="bibr" rid="bib1.bibx42" id="paren.24"/>. The two models are first compared and
validated against an experiment in which a simple bore impinges on a single
column and then compared for the Seaside model.</p>
</sec>
</sec>
<sec id="Ch1.S2">
  <title>Simulation methodology</title>
<sec id="Ch1.S2.SS1">
  <title>Two-dimensional model</title>
      <?pagebreak page2492?><p id="d1e409">The nonlinear shallow-water equations can be written as

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M16" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E1"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi>h</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mi>h</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi>v</mml:mi><mml:mi>h</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E2"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>(</mml:mo><mml:mi>h</mml:mi><mml:mi>u</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi>h</mml:mi><mml:mi>u</mml:mi><mml:mi>v</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi>y</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>h</mml:mi><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mi>g</mml:mi><mml:msup><mml:mi>h</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfenced><mml:mi>x</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>g</mml:mi><mml:mi>h</mml:mi><mml:msub><mml:mi>B</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi>D</mml:mi><mml:mi>u</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E3"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>(</mml:mo><mml:mi>h</mml:mi><mml:mi>v</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi>h</mml:mi><mml:mi>u</mml:mi><mml:mi>v</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi>x</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>h</mml:mi><mml:msup><mml:mi>v</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mi>g</mml:mi><mml:msup><mml:mi>h</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfenced><mml:mi>y</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>g</mml:mi><mml:mi>h</mml:mi><mml:msub><mml:mi>B</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi>D</mml:mi><mml:mi>v</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mi>u</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are the depth-averaged velocities in the two
horizontal directions, <inline-formula><mml:math id="M19" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula> is the water depth, <inline-formula><mml:math id="M20" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> is gravitational
acceleration, <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is elevation of the seabed, and <inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:mi>D</mml:mi><mml:mo>=</mml:mo><mml:mi>D</mml:mi><mml:mo>(</mml:mo><mml:mi>h</mml:mi><mml:mo>,</mml:mo><mml:mi>u</mml:mi><mml:mo>,</mml:mo><mml:mi>v</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is the
drag coefficient. The drag coefficient <inline-formula><mml:math id="M23" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> could have many forms; in this
study it is represented by
            <disp-formula id="Ch1.E4" content-type="numbered"><mml:math id="M24" display="block"><mml:mrow><mml:mi>D</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>g</mml:mi><mml:msup><mml:mi>M</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msqrt><mml:mrow><mml:mo>(</mml:mo><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mi>v</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:msqrt></mml:mrow><mml:mrow><mml:msup><mml:mi>h</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M25" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula> is the Manning's coefficient and is set to 0.025 s m<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for all two-dimensional simulations in this study. The
subscripts in these equations represent first-order partial derivatives.</p>
      <p id="d1e815">The GeoClaw model <xref ref-type="bibr" rid="bib1.bibx18 bib1.bibx6" id="paren.25"/> features
AMR and is released as a submodule of the Clawpack
software <xref ref-type="bibr" rid="bib1.bibx9" id="paren.26"/>, an open-source package for solving hyperbolic
systems of partial differential equations (PDEs) of one, two, and three
dimensions, through finite-volume implementation of high-resolution
Godunov-type “wave-propagation algorithms”. Cell averages of the solution
variables <inline-formula><mml:math id="M27" display="inline"><mml:mi>q</mml:mi></mml:math></inline-formula> are computed over the volume of each cell and updated with
waves propagating into the cell from all surrounding cell edges. The wave at
each edge is computed by solving a “Riemann problem” with initial piecewise
constant data determined by cell averages on each side of the edge. This
method is especially good at solving problems with discontinuous solutions
like shock waves, which usually arise in the solution of nonlinear hyperbolic
equations (e.g., bores in the case of NSWEs).</p>
      <p id="d1e831">Specifically, GeoClaw uses a variant of the <inline-formula><mml:math id="M28" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>-wave formulation of the
wave-propagation algorithms that allow incorporation of the topography
source terms on the right-hand side of Eqs. (<xref ref-type="disp-formula" rid="Ch1.E2"/>) and
(<xref ref-type="disp-formula" rid="Ch1.E3"/>) into the Riemann problem directly. The augmented Riemann solver
in GeoClaw combines the desirable qualities of the Roe solver
<xref ref-type="bibr" rid="bib1.bibx35" id="paren.27"/>, HLLE-type (Harten, Lax, van Leer and Einfeldt)
solvers <xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx11" id="paren.28"/>, and the <inline-formula><mml:math id="M29" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>-wave
approach <xref ref-type="bibr" rid="bib1.bibx4" id="paren.29"/>. The Roe solver provides an exact solution for
the single-shock Riemann problem. It is also depth-positive semidefinite like
the HLLE solvers, has a natural entropy fix by providing more than two waves,
and yields a better approximation for problems with large rarefactions. A
large class of steady states is also preserved, even for non-stationary
steady states with nonzero fluid velocity. In addition, it is able to handle
the presence of dry states in the “Riemann problem”, in which one state is
wet (<inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mi>h</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>) while another is dry (<inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:mi>h</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>), or both states are dry. It also
works robustly in situations where the topography changes abruptly from one
cell to another by an arbitrarily large value. For more details on the
augmented Riemann solver in GeoClaw, see <xref ref-type="bibr" rid="bib1.bibx12" id="text.30"/>.</p>
      <p id="d1e889">A typical characteristic of tsunami inundation models, especially those that
incorporate the built environment, is that the spatial scale of regions of
interest may vary from kilometers to meters. For regions several kilometers
offshore, grid cells can be as large as thousands of meters on a side, while
for regions near the shoreline or in a built environment onshore, grid cells
must be refined to several meters or less, since the size of a building may
be only several meters and an adequate number of grid cells are required to
achieve acceptable accuracy. In GeoClaw, a patch-based AMR technique can
efficiently handle these situations <xref ref-type="bibr" rid="bib1.bibx18 bib1.bibx5" id="paren.31"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Three-dimensional model</title>
      <p id="d1e901">For the three-dimensional model, version 2.3.1 of the open-source computational fluid dynamics (CFD) package
OpenFOAM was used <xref ref-type="bibr" rid="bib1.bibx42" id="paren.32"/>. The package comes with different
solvers for different types of flow. For tsunami inundation, in which there
are two immiscible fluids (air and water) with a free interface, the
interFoam solver can be chosen which uses the PISO algorithm to solve the
RANS equations with a volume-of-fluid (VOF) approach to model the free
surface. For details on these numerical methods, readers can refer to
<xref ref-type="bibr" rid="bib1.bibx14" id="text.33"/> and <xref ref-type="bibr" rid="bib1.bibx45" id="text.34"/>. The VOF approach defines a scalar field
<inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, which represents fractional volume of water in each cell. A
cell full of water (<inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:math></inline-formula> kg m<inline-formula><mml:math id="M34" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.0</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M37" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) has <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.0</mml:mn></mml:mrow></mml:math></inline-formula>, while a cell full of air
(<inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.22</mml:mn></mml:mrow></mml:math></inline-formula> kg m<inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.48</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> m<inline-formula><mml:math id="M42" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M43" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) has <inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.0</mml:mn></mml:mrow></mml:math></inline-formula>.
Here <inline-formula><mml:math id="M45" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> is the mass density of the fluid and <inline-formula><mml:math id="M46" display="inline"><mml:mi mathvariant="italic">ν</mml:mi></mml:math></inline-formula> is the kinematic
viscosity. A cell with <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> between 0 and 1 contains the
interface. A special transport equation is solved to advance the <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> field. To close the RANS equations, Menter's <inline-formula><mml:math id="M49" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M50" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> shear stress transport (SST) model
<xref ref-type="bibr" rid="bib1.bibx24" id="paren.35"/> was applied.</p>
      <p id="d1e1144">There are many other turbulence closure models, among which the <inline-formula><mml:math id="M51" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M52" display="inline"><mml:mi mathvariant="italic">ϵ</mml:mi></mml:math></inline-formula>
model is also very popular. It is suitable for fully turbulent and
non-separated flows and has the shortcoming of numerical stiffness in the
viscous sublayer, which can result in stability issues <xref ref-type="bibr" rid="bib1.bibx23" id="paren.36"/>. It
was also applied to model the inundation process in this study but became
unstable during the simulation. The <inline-formula><mml:math id="M53" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M54" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> SST is generally more stable
and behaves better in modeling partially separated flows, which is the case
in the current study (flow becomes separated after passing around the built
environment).</p>
      <?pagebreak page2493?><p id="d1e1178">With the assumption of an incompressible fluid, the RANS equations are listed
below:

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M55" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E5"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E6"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="italic">ρ</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi><mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>j</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi mathvariant="italic">μ</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi><mml:mover accent="true"><mml:mrow><mml:msubsup><mml:mi>u</mml:mi><mml:mi>i</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:msubsup><mml:mi>u</mml:mi><mml:mi>j</mml:mi><mml:mo>′</mml:mo></mml:msubsup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the mean velocity in the <inline-formula><mml:math id="M57" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> direction,
<inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:msup><mml:msub><mml:mi>u</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> is the fluctuating component of velocity in the <inline-formula><mml:math id="M59" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> direction,
and <inline-formula><mml:math id="M60" display="inline"><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> is the mean pressure. If <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the velocity component
in the <inline-formula><mml:math id="M62" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> direction, then <inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:msub><mml:mi>u</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>. The
Reynolds stress term in Eq. (<xref ref-type="disp-formula" rid="Ch1.E6"/>) is
            <disp-formula id="Ch1.E7" content-type="numbered"><mml:math id="M64" display="block"><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi><mml:mover accent="true"><mml:mrow><mml:msubsup><mml:mi>u</mml:mi><mml:mi>i</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:msubsup><mml:mi>u</mml:mi><mml:mi>j</mml:mi><mml:mo>′</mml:mo></mml:msubsup></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mfenced close="]" open="["><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mover accent="true"><mml:mi>u</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">2</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:mfrac></mml:mstyle><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi><mml:msub><mml:mi mathvariant="italic">δ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M65" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is the turbulence kinetic energy and <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the turbulence eddy
viscosity. The equations above need to be closed with some closure model.
Here Menter's <inline-formula><mml:math id="M67" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M68" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> SST model <xref ref-type="bibr" rid="bib1.bibx24" id="paren.37"/> was applied:

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M69" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E8"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="bold">U</mml:mi><mml:mi>k</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi>G</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mo>∗</mml:mo></mml:msup><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mfenced open="[" close="]"><mml:mrow><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="bold">U</mml:mi><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:mi mathvariant="italic">β</mml:mi><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E9"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace width="1em" linebreak="nobreak"/><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfenced><mml:msub><mml:mi mathvariant="normal">CD</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M70" display="inline"><mml:mi mathvariant="italic">ν</mml:mi></mml:math></inline-formula> is the kinematic viscosity of fluid and <inline-formula><mml:math id="M71" display="inline"><mml:mover accent="true"><mml:mi>G</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover></mml:math></inline-formula> is
defined as <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi>G</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:mo>min⁡</mml:mo><mml:mfenced close="}" open="{"><mml:mrow><mml:mi>G</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mo>∗</mml:mo></mml:msup><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>,
where <inline-formula><mml:math id="M73" display="inline"><mml:mi>G</mml:mi></mml:math></inline-formula> is the production term and defined as
            <disp-formula id="Ch1.E10" content-type="numbered"><mml:math id="M74" display="block"><mml:mrow><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>;</mml:mo></mml:mrow></mml:math></disp-formula>
          <inline-formula><mml:math id="M75" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> is the invariant measure of the strain rate, defined by
            <disp-formula id="Ch1.E11" content-type="numbered"><mml:math id="M76" display="block"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>S</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>S</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:msqrt><mml:mo>;</mml:mo></mml:mrow></mml:math></disp-formula>
          and <inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the strain rate tensor, defined by <inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="bold">U</mml:mi><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mi>T</mml:mi></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is a blending function
defined by
            <disp-formula id="Ch1.E12" content-type="numbered"><mml:math id="M80" display="block"><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{9.5}{9.5}\selectfont$\displaystyle}?><mml:msub><mml:mi>F</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mi>tanh⁡</mml:mi><mml:mfenced close="}" open="{"><mml:mrow><mml:msup><mml:mfenced open="{" close="}"><mml:mrow><mml:mo movablelimits="false">min⁡</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mo movablelimits="false">max⁡</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:msqrt><mml:mi>k</mml:mi></mml:msqrt><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mo>∗</mml:mo></mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">500</mml:mn><mml:mi mathvariant="italic">ν</mml:mi></mml:mrow><mml:mrow><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>,</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub><mml:mi>k</mml:mi></mml:mrow><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">CD</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow><mml:mo>∗</mml:mo></mml:msubsup><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:mrow></mml:mfenced><?xmltex \hack{$\egroup}?><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">CD</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow><mml:mo>∗</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> is defined by
            <disp-formula id="Ch1.E13" content-type="numbered"><mml:math id="M82" display="block"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">CD</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow><mml:mo>∗</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mo movablelimits="false">max⁡</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi mathvariant="normal">CD</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:math></disp-formula>
          and <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">CD</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is defined by
            <disp-formula id="Ch1.E14" content-type="numbered"><mml:math id="M84" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="normal">CD</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>k</mml:mi><mml:mo>⋅</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow><mml:mi mathvariant="italic">ω</mml:mi></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          After solving Eqs. (<xref ref-type="disp-formula" rid="Ch1.E8"/>) and (<xref ref-type="disp-formula" rid="Ch1.E9"/>), <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> can be
calculated by
            <disp-formula id="Ch1.E15" content-type="numbered"><mml:math id="M86" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mi>k</mml:mi></mml:mrow><mml:mrow><mml:mo>max⁡</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>,</mml:mo><mml:mi>S</mml:mi><mml:msub><mml:mi>F</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is a second blending function, defined as
            <disp-formula id="Ch1.E16" content-type="numbered"><mml:math id="M88" display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mi>tanh⁡</mml:mi><mml:mfenced close="}" open="{"><mml:mrow><mml:msup><mml:mfenced open="[" close="]"><mml:mrow><mml:mo movablelimits="false">max⁡</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msqrt><mml:mi>k</mml:mi></mml:msqrt></mml:mrow><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mo>∗</mml:mo></mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">500</mml:mn><mml:mi mathvariant="italic">ν</mml:mi></mml:mrow><mml:mrow><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="italic">ω</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e2347">All other constants are computed using a blend from the corresponding
constants associated with the <inline-formula><mml:math id="M89" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M90" display="inline"><mml:mi mathvariant="italic">ϵ</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M91" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-<inline-formula><mml:math id="M92" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> models via
blending functions like <inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>F</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>.
Values for these constants are <inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.85013</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.0</mml:mn></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.85616</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.075</mml:mn></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.0828</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5532</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.4403</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mo>∗</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.09</mml:mn></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.31</mml:mn></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10.0</mml:mn></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx25" id="paren.38"/>.</p>
      <p id="d1e2599">A force vector, <inline-formula><mml:math id="M105" display="inline"><mml:mi mathvariant="bold">F</mml:mi></mml:math></inline-formula>, on a structure is computed by summing forces
from pressure, <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">F</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and from viscous stress, <inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">F</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
            <disp-formula id="Ch1.E17" content-type="numbered"><mml:math id="M108" display="block"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">F</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">F</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub></mml:mrow></mml:math></disp-formula>
          <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">F</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">F</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are calculated respectively by

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M111" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E18"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="bold">F</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>i</mml:mi></mml:munder><mml:mfenced open="(" close=")"><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mi>p</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>A</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold-italic">n</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E19"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="bold">F</mml:mi><mml:mi mathvariant="normal">v</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>i</mml:mi></mml:munder><mml:mfenced close="}" open="{"><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">n</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:msub><mml:mi>A</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M112" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> is the index of cell faces on the building on which forces need to
be evaluated; <inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the total pressure on face <inline-formula><mml:math id="M114" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>; <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is area of face
<inline-formula><mml:math id="M116" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>; <inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is volume fraction of water in the
adjacent cell of face <inline-formula><mml:math id="M118" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>; <inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">n</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the unit normal vector of face
<inline-formula><mml:math id="M120" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> pointing into the computational domain; and <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the
viscous stress tensor at face <inline-formula><mml:math id="M122" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, which can be expressed by <inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="{" close="}"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mfenced open="[" close="]"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="bold">U</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mi>T</mml:mi></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> on face <inline-formula><mml:math id="M124" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Initial comparison of the 2-D and 3-D numerical models</title>
      <p id="d1e2945">An initial comparison of the two numerical models was conducted by modeling
the interaction between a bore and a free-standing coastal structure, with
experimental results from <xref ref-type="bibr" rid="bib1.bibx2" id="text.39"/>. The experiment was
performed at the Charles W. Harris Hydraulics Laboratory at UW, Seattle. In the experiment, a square column was placed in a
16.6 m long, 0.6 m wide, and 0.45 m deep wave tank, and aligned in parallel to
the tank side walls (Fig. <xref ref-type="fig" rid="Ch1.F1"/>).</p>
      <p id="d1e2953">A thin gate separated water in the tank into two parts with different depths:
<inline-formula><mml:math id="M125" display="inline"><mml:mn mathvariant="normal">0.02</mml:mn></mml:math></inline-formula> m deep on the square column side and <inline-formula><mml:math id="M126" display="inline"><mml:mn mathvariant="normal">0.25</mml:mn></mml:math></inline-formula> m deep on the other side.
When the gate was lifted to the top of the tank in <inline-formula><mml:math id="M127" display="inline"><mml:mn mathvariant="normal">0.2</mml:mn></mml:math></inline-formula> s by a <inline-formula><mml:math id="M128" display="inline"><mml:mn mathvariant="normal">6.4</mml:mn></mml:math></inline-formula> cm
diameter pneumatic piston, a bore formed and propagated toward the square
column downstream. The square column with a <inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:mn mathvariant="normal">12</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:math></inline-formula> cm square-shaped
cross section was placed <inline-formula><mml:math id="M130" display="inline"><mml:mn mathvariant="normal">5.2</mml:mn></mml:math></inline-formula> m downstream from the gate. To measure
hydrodynamic forces, the column was supported from above and connected with a
force sensor.</p>
      <?pagebreak page2494?><p id="d1e3004">Both the three-dimensional and two-dimensional models were developed at model
scale to simulate the physical experiment. The three-dimensional OpenFOAM
model incorporated the column into the computational domain by simply cutting
off a block of mesh of the same shape from the computational domain. The mesh
was coarse far from the column (<inline-formula><mml:math id="M131" display="inline"><mml:mn mathvariant="normal">1</mml:mn></mml:math></inline-formula> cm by <inline-formula><mml:math id="M132" display="inline"><mml:mn mathvariant="normal">1</mml:mn></mml:math></inline-formula> cm by <inline-formula><mml:math id="M133" display="inline"><mml:mn mathvariant="normal">0.5</mml:mn></mml:math></inline-formula> cm in the <inline-formula><mml:math id="M134" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M135" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>,
and <inline-formula><mml:math id="M136" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> directions, where <inline-formula><mml:math id="M137" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> is the vertical direction) and was refined
gradually to <inline-formula><mml:math id="M138" display="inline"><mml:mn mathvariant="normal">0.125</mml:mn></mml:math></inline-formula> cm by <inline-formula><mml:math id="M139" display="inline"><mml:mn mathvariant="normal">0.125</mml:mn></mml:math></inline-formula> cm by <inline-formula><mml:math id="M140" display="inline"><mml:mn mathvariant="normal">0.0625</mml:mn></mml:math></inline-formula> cm in the <inline-formula><mml:math id="M141" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M142" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>, and <inline-formula><mml:math id="M143" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>
directions near the column surface. These distances are evaluated to be <inline-formula><mml:math id="M144" display="inline"><mml:mn mathvariant="normal">70</mml:mn></mml:math></inline-formula>,
<inline-formula><mml:math id="M145" display="inline"><mml:mn mathvariant="normal">70</mml:mn></mml:math></inline-formula>, and <inline-formula><mml:math id="M146" display="inline"><mml:mn mathvariant="normal">35</mml:mn></mml:math></inline-formula>, respectively, in terms of dimensionless wall distance defined as
<inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:msup><mml:mi>y</mml:mi><mml:mo>+</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi>y</mml:mi><mml:msup><mml:mi>u</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="italic">ν</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M148" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> is the distance, <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> is the friction
velocity, and <inline-formula><mml:math id="M150" display="inline"><mml:mi mathvariant="italic">ν</mml:mi></mml:math></inline-formula> is the kinematic fluid viscosity. The mesh was finer in
the <inline-formula><mml:math id="M151" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> directions to better capture the water surface. Forces on the column
were obtained by integrating pressure and shear forces from fluid on the
surface of the column.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e3181">Schematic of the experimental setup for the interaction between bore
and square column. The top figure shows a plan view, and the bottom figure
shows a cross section through the center of the column, also illustrating the
bore. (Reprinted with permission from <xref ref-type="bibr" rid="bib1.bibx28" id="altparen.40"/>. Copyright by
ASCE.)</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f01.pdf"/>

      </fig>

      <p id="d1e3194">In the two-dimensional GeoClaw model, the column was incorporated into the
computational domain through the topography term <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> on the right-hand side
of Eqs. (<xref ref-type="disp-formula" rid="Ch1.E2"/>) and (<xref ref-type="disp-formula" rid="Ch1.E3"/>). Values for <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are set to
a very large constant value, <inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, in the region of the column and to <inline-formula><mml:math id="M155" display="inline"><mml:mn mathvariant="normal">0</mml:mn></mml:math></inline-formula>
elsewhere. This prevents water from overtopping the area, thus simulating a
column. Setting <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:msub><mml:mi>h</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to a very large value also made all four side walls of
the square column be more “vertical” in the model since they are
represented by steep slopes arising from <inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> (outside the column) to <inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (inside the column). The coarsest level grid had a resolution of <inline-formula><mml:math id="M159" display="inline"><mml:mn mathvariant="normal">0.02</mml:mn></mml:math></inline-formula> m by <inline-formula><mml:math id="M160" display="inline"><mml:mn mathvariant="normal">0.02</mml:mn></mml:math></inline-formula> m and covered most of the computational domain; the finest mesh
near the column was <inline-formula><mml:math id="M161" display="inline"><mml:mn mathvariant="normal">0.25</mml:mn></mml:math></inline-formula> cm by <inline-formula><mml:math id="M162" display="inline"><mml:mn mathvariant="normal">0.25</mml:mn></mml:math></inline-formula> cm, which corresponds to a
dimensionless wall distance of <inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:msup><mml:mi>y</mml:mi><mml:mo>+</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">140</mml:mn></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e3338">First, a case without the column was modeled. Figure <xref ref-type="fig" rid="Ch1.F2"/> shows predictions of water level history,
measured at <inline-formula><mml:math id="M164" display="inline"><mml:mn mathvariant="normal">5.2</mml:mn></mml:math></inline-formula> m downstream from the gate (i.e., at <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">11.1</mml:mn></mml:mrow></mml:math></inline-formula>, the center
of the column; see Fig. <xref ref-type="fig" rid="Ch1.F1"/> for location of
the gauge) by the two numerical models and the experiment. In general, both
2-D and 3-D models accurately predict the arrival time of the bore, which is
<inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3.2</mml:mn></mml:mrow></mml:math></inline-formula> s.</p>
      <p id="d1e3376">The OpenFOAM model matches the measurement better than GeoClaw with a sharp
(but not vertical) slope at the front, a gradually rising surface to the peak
near <inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> s, then a downward slope, followed by interactions with the
reflected wave from the back wall that creates the second jump in water level
at around <inline-formula><mml:math id="M168" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">14</mml:mn></mml:mrow></mml:math></inline-formula> s.</p>
      <p id="d1e3403">OpenFOAM includes water viscosity, which diffuses sharp discontinuities. In
contrast, solving the nonlinear shallow-water equations with an initial
discontinuity yields a shock wave (discontinuity) propagating to the right as
a vertical bore front followed by a region with constant water depth; as a
consequence, GeoClaw slightly overestimates the initial height of the bore
front, underestimates the height at <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> s, and presents the reflected wave
as a second sharp discontinuity at <inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">13.1</mml:mn></mml:mrow></mml:math></inline-formula> s.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p id="d1e3432">Time history of water level at <inline-formula><mml:math id="M171" display="inline"><mml:mn mathvariant="normal">5.2</mml:mn></mml:math></inline-formula> m from the gate (center of the
column) with the column removed.</p></caption>
        <?xmltex \igopts{width=142.26378pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f02.png"/>

      </fig>

      <p id="d1e3449">At the same location, streamwise (the along-channel direction) components of
the velocity at different depths were also predicted. Figure <xref ref-type="fig" rid="Ch1.F3"/> shows time histories of streamwise velocity
at nine different distances from the bottom. Note that, since the two-dimensional
model is depth-averaged, its predicted velocity is constant with depth. The
prediction from the two-dimensional model matches the measurements very well
near the water surface, except for the spike at the front, which is better
captured by the three-dimensional model. The three-dimensional
model underestimating flow velocity near the bottom might be due to our near-wall
treatment being imperfect. The velocities in the upper region are also hard to
predict well because of air entrained in the water near the free surface as well
as the fact that the velocimeter may not be immersed in water at times,
causing the measurement to oscillate dramatically.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p id="d1e3456">Time history of streamwise velocity at different distances, <inline-formula><mml:math id="M172" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula>,
from the bottom at <inline-formula><mml:math id="M173" display="inline"><mml:mn mathvariant="normal">5.2</mml:mn></mml:math></inline-formula> m from the gate (center of the column) with the
column removed. Abscissa: time (s). Ordinate: velocity (m s<inline-formula><mml:math id="M174" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>).</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f03.png"/>

      </fig>

      <?pagebreak page2495?><p id="d1e3491">Figure <xref ref-type="fig" rid="Ch1.F4"/> shows a comparison of total forces on the square
column from the experiment, the three-dimensional model, and the
two-dimensional model. The force predicted by the three-dimensional model was
obtained by integrating the pressure and viscous fluid forces on the surface
of the column (see Eq. <xref ref-type="disp-formula" rid="Ch1.E17"/>). The three-dimensional model predicts
the force very well in terms of magnitude and is able to capture even the
small spike near <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> s. In the two-dimensional model, no hydrodynamic
pressure field is available for force prediction. To predict forces from the
two-dimensional model, data from the previous case without the column were
used instead. The water level, <inline-formula><mml:math id="M176" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula>, and streamwise velocity, <inline-formula><mml:math id="M177" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula>, were first
sampled at the center of the footprint of the column that was removed from
the domain, to compute the momentum flux, <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mi>M</mml:mi><mml:mo>=</mml:mo><mml:mi>h</mml:mi><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>. As recommended by FEMA
P-646 (<xref ref-type="bibr" rid="bib1.bibx1" id="altparen.41"/>), the hydrodynamic forces on
such a structure can be computed as
          <disp-formula id="Ch1.E20" content-type="numbered"><mml:math id="M179" display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>(</mml:mo><mml:mi>h</mml:mi><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo><mml:mi>b</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the drag coefficient and may be conservatively chosen to be
<inline-formula><mml:math id="M181" display="inline"><mml:mn mathvariant="normal">2.0</mml:mn></mml:math></inline-formula> as recommended by FEMA P-646 (<xref ref-type="bibr" rid="bib1.bibx1" id="altparen.42"/>),
<inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the streamwise component of the fluid forces, <inline-formula><mml:math id="M183" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> is the density
of the fluids, <inline-formula><mml:math id="M184" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula> is the water depth, <inline-formula><mml:math id="M185" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula> is the fluid velocity at the
location of the structure, and <inline-formula><mml:math id="M186" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> is the breadth of the structure in the
plane normal to the direction of flow. Note that the <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:mi>h</mml:mi><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> term in
parentheses is the momentum flux, <inline-formula><mml:math id="M188" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p id="d1e3670">Comparison of measured and predicted horizontal forces on the square
column. Sampling frequency is 300 Hz in the experiment and 1000 Hz in both
numerical models.</p></caption>
        <?xmltex \igopts{width=142.26378pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f04.png"/>

      </fig>

      <p id="d1e3679">Note that in the experiment or three-dimensional model the water level on
the upstream side of the column is different from that on the downstream side
of the column. This causes a difference in hydrostatic pressure and thus a
hydrostatic force on the column. For this reason, it may be more appropriate
to refer to this value as the coefficient of resistance instead of solely as
a drag coefficient. Using a drag coefficient of <inline-formula><mml:math id="M189" display="inline"><mml:mn mathvariant="normal">2.0</mml:mn></mml:math></inline-formula> overestimates the force
by <inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:mn mathvariant="normal">13</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> in general. This is as expected since it is said to be
“conservative” according to FEMA P-646
(<xref ref-type="bibr" rid="bib1.bibx1" id="altparen.43"/>). Figure <xref ref-type="fig" rid="Ch1.F4"/> also
shows that, if a drag coefficient of <inline-formula><mml:math id="M191" display="inline"><mml:mn mathvariant="normal">1.76</mml:mn></mml:math></inline-formula> is used instead, the force
prediction from the two-dimensional model matches the measurement more
closely.</p>
</sec>
<sec id="Ch1.S4">
  <title>The Seaside wave tank model</title>
<sec id="Ch1.S4.SS1">
  <title>The physical experiment</title>
      <p id="d1e3724">A 1 : 50 scale physical model of part of Seaside, Oregon, adjacent to the
Cascadia Subduction Zone (CSZ), was constructed in the Tsunami Wave Basin at
the O.H. Hinsdale Wave Research Laboratory at Oregon State University, and a
series of experiments were conducted to measure flow velocities and water
levels at 31 locations within the model-scale community. For full details on
the experiment, one can refer to <xref ref-type="bibr" rid="bib1.bibx31" id="text.44"/>.</p>
      <p id="d1e3730">The rectangular basin for the experiment is 48.8 m long, 26.5 m wide, and
2.1 m deep. Figure <xref ref-type="fig" rid="Ch1.F5"/> shows the top and side view of
the basin. The still water depth at the wave maker is 0.97 m and decreases as
it approaches the shoreline. A <inline-formula><mml:math id="M192" display="inline"><mml:mn mathvariant="normal">0.04</mml:mn></mml:math></inline-formula> m height (model-scale) seawall was
also constructed between all idealized buildings and the shoreline and was
parallel to the wave maker. Figures <xref ref-type="fig" rid="Ch1.F6"/> and
<xref ref-type="fig" rid="Ch1.F7"/> show the locations of the 31 gauges where water level
and flow velocity were measured at a sampling frequency of 50 Hz. The gauges
are grouped into four groups – A, B, C, and D (from bottom to top) – and marked by
different symbols. Buildings in blue are large commercial buildings like
hotels and hospitals. All red buildings are of the same size and represent
small commercial buildings. Buildings in yellow are residential structures
and are also all the same size.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p id="d1e3748">Top view and side view of the basin.</p></caption>
          <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f05.pdf"/>

        </fig>

      <?pagebreak page2496?><p id="d1e3757">In the experiment, the piston-type wave maker was designed to generate an
initial wave with a wave height of approximately <inline-formula><mml:math id="M193" display="inline"><mml:mn mathvariant="normal">0.2</mml:mn></mml:math></inline-formula> m (model scale) at the
lower horizontal section of the basin; this is equivalent to <inline-formula><mml:math id="M194" display="inline"><mml:mn mathvariant="normal">10</mml:mn></mml:math></inline-formula> m at full
scale, which corresponds to a 500-year CSZ tsunami for this region
<xref ref-type="bibr" rid="bib1.bibx43" id="paren.45"/>. Note that this is not a solitary wave but a long
single-peak wave. Experimental measurement of the wave maker speed was fit
with a Gaussian function of the form
            <disp-formula id="Ch1.E21" content-type="numbered"><mml:math id="M195" display="block"><mml:mrow><mml:mi>s</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          with <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M197" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">14.75</mml:mn></mml:mrow></mml:math></inline-formula>, and amplitude <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.51</mml:mn></mml:mrow></mml:math></inline-formula>. Equation (<xref ref-type="disp-formula" rid="Ch1.E21"/>) was used as input to generate numerical wave in current
simulation. The experiment was repeated many times with identical initial
conditions. Data from multiple trials were averaged to obtain the results
presented here to smooth out stochastic features of the experiment, more
details of which were presented in <xref ref-type="bibr" rid="bib1.bibx31" id="text.46"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p id="d1e3867">Layout of all buildings and gauges in the experiment: blue, large
hotels or commercial buildings; red, smaller commercial buildings; yellow,
residential structures. <inline-formula><mml:math id="M199" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>: gauge A1–A9; <inline-formula><mml:math id="M200" display="inline"><mml:mo>∗</mml:mo></mml:math></inline-formula>: gauge B1–B9; <inline-formula><mml:math id="M201" display="inline"><mml:mo>⊗</mml:mo></mml:math></inline-formula>: gauge C1–C9;
<inline-formula><mml:math id="M202" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>: gauge D1–D4.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f06.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p id="d1e3906">Four different subsections and layout of gauges.</p></caption>
          <?xmltex \igopts{width=142.26378pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f07.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS2">
  <title>Setup of numerical models</title>
<sec id="Ch1.S4.SS2.SSS1">
  <title>OpenFOAM model</title>
      <p id="d1e3926">In the three-dimensional OpenFOAM model, a numerical wave basin was developed
to simulate the experiments. It was built at the model scale instead of full
scale to exclude scaling effects. This facilitated the comparison between the
numerical model and the physical experiment.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e3932">OpenFOAM boundary conditions for the current numerical model (for
the <monospace>fixedValue</monospace> boundary condition, a constant value of 0 is used for
the model in this study).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Field</oasis:entry>
         <oasis:entry colname="col2">All walls and floor</oasis:entry>
         <oasis:entry colname="col3">Atmosphere</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Air/water phase indicator, <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">zeroGradient</oasis:entry>
         <oasis:entry colname="col3">inletOutlet</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Velocity, <inline-formula><mml:math id="M204" display="inline"><mml:mi mathvariant="bold">U</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">fixedValue</oasis:entry>
         <oasis:entry colname="col3">pressureInletOutletVelocity</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Pressure without hydrostatic part, <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>r</mml:mi><mml:mi>g</mml:mi><mml:mi>h</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">fixedFluxPressure</oasis:entry>
         <oasis:entry colname="col3">totalPressure</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Turbulent kinetic energy, <inline-formula><mml:math id="M206" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">kqRWallFunction</oasis:entry>
         <oasis:entry colname="col3">inletOutlet</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Specific dissipation rate, <inline-formula><mml:math id="M207" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">omegaWallFunction</oasis:entry>
         <oasis:entry colname="col3">inletOutlet</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Turbulence eddy viscosity, <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">nutUSpaldingWallFunction</oasis:entry>
         <oasis:entry colname="col3">zeroGradient</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e4093">To generate the required waves, a numerical wave generator was previously
developed in OpenFOAM <xref ref-type="bibr" rid="bib1.bibx27" id="paren.47"/>, and it was validated
against available data from a pair of experiments. Two steps are taken by the
numerical wave generator to simulate the wave-generating procedure of a
piston-type wave maker. First, a short subsection of the wave basin adjacent
to the wave maker is modeled. This step is conducted with the wave maker as
the reference frame, eliminating the need for a moving mesh, and fluid is
forced to enter the domain at the wave maker's speed from the end of the
domain that is opposite to the wave maker, to simulate the movement of the
wave maker. A time-varying acceleration vector field is also embedded in the
solver to compensate for the non-inertial frame. The second step is to map
all field data in this domain (the generated wave) to a full model of the
basin with the mapFields utility in OpenFOAM after the wave maker stops
moving. Further simulations can then start from here.</p>
      <p id="d1e4099">One disadvantage of the three-dimensional model is that it requires heavy
computational resources. Even with four dual-eight-core 2 GHz Intel Xeon e5-2650
machines (64 total processors), it was not possible to model the entire
basin. Instead, the entire domain was divided into four different subsections
of equal width to predict flow parameters at different groups of gauges (see
Fig. <xref ref-type="fig" rid="Ch1.F7"/>). For clarity, only the onshore domain is shown in
the figure; however, the numerical domain spans the entire 48.8 m from the
wave maker to the back wall of the basin. For each simulation, approximately
60 million cells were used, and the solver was run in parallel with the 64 processor cores mentioned above for <inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> days (including wave
generation), which is equivalent to a total CPU time of <inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">640</mml:mn></mml:mrow></mml:math></inline-formula> days.</p>
      <?pagebreak page2497?><p id="d1e4125">The boundary conditions for each boundary in the numerical wave basin are
listed in Table <xref ref-type="table" rid="Ch1.T1"/>. The term <italic>all walls and floor</italic> in the
table includes the bottom, side walls, two end walls, and surfaces of internal
buildings. Another term, <italic>atmosphere</italic>, refers to the upper boundary of
the computational domain. A <monospace>zeroGradient</monospace> boundary condition
specifies zero gradient on the boundary. A <monospace>fixedValue</monospace> boundary
condition sets the value of a quantity to a constant specified value on the
boundary. The velocity field on a wall is set to <inline-formula><mml:math id="M211" display="inline"><mml:mn mathvariant="normal">0</mml:mn></mml:math></inline-formula>. An <monospace>inletOutlet</monospace>
boundary condition is identical to the <monospace>zeroGradient</monospace> boundary
condition if the flux is out of domain but is switched to apply a
<monospace>fixedValue</monospace> boundary condition if the flux is into the domain. The
<monospace>pressureInletOutletVelocity</monospace> condition at the top of the domain is
essentially identical to a <monospace>zeroGradient</monospace> boundary condition in our
current model. On <italic>all walls and floor</italic>, <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>r</mml:mi><mml:mi>g</mml:mi><mml:mi>h</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is defined such
that there is zero flux, using the <monospace>fixedFluxPressure</monospace> boundary
condition, while the <italic>atmosphere</italic> was defined with a uniform reference
pressure <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> using the <monospace>totalPressure</monospace> boundary condition:
              <disp-formula id="Ch1.E22" content-type="numbered"><mml:math id="M214" display="block"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>r</mml:mi><mml:mi>g</mml:mi><mml:mi>h</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="{" close=""><mml:mtable columnspacing="1em" class="cases" rowspacing="0.2ex" columnalign="left left" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mtext>for outflow</mml:mtext></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle></mml:mstyle><mml:mo>|</mml:mo><mml:mi mathvariant="bold">U</mml:mi><mml:msup><mml:mo>|</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mtext>for inflow</mml:mtext></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e4271">Here <inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>r</mml:mi><mml:mi>g</mml:mi><mml:mi>h</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is pressure subtracted by static pressure <inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>g</mml:mi><mml:mi>h</mml:mi></mml:mrow></mml:math></inline-formula>, where
<inline-formula><mml:math id="M217" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> is the water density, <inline-formula><mml:math id="M218" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> is the gravitational acceleration, and <inline-formula><mml:math id="M219" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula>
is relative depth under the initial free surface. The turbulence quantities near
solid walls are obtained with wall functions that model them as functions of
distance from the boundary.</p>
      <p id="d1e4323">Centers of the first layer of cells near the wall are chosen as positions in
the log-law region of the boundary layer where the wall functions are
applied. A <monospace>kqRWallFunction</monospace> boundary condition can be expressed as
<inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>k</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M221" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> on a wall, where <inline-formula><mml:math id="M222" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> is a unit
normal vector to the wall. An <monospace>omegaWallFunction</monospace> boundary condition
provides a wall function for the turbulence specific dissipation, <inline-formula><mml:math id="M223" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>,
with default model coefficients <inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:mi>E</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">9.8</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:mi mathvariant="italic">κ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.41</mml:mn></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="italic">μ</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.09</mml:mn></mml:mrow></mml:math></inline-formula>.
It is computed with
              <disp-formula id="Ch1.E23" content-type="numbered"><mml:math id="M227" display="block"><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">ω</mml:mi><mml:mi mathvariant="normal">vis</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>log⁡</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:msqrt><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ω</mml:mi><mml:mi mathvariant="normal">vis</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the value of <inline-formula><mml:math id="M229" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> in the viscous region, and
<inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>log⁡</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the value of <inline-formula><mml:math id="M231" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> in the logarithmic region
<xref ref-type="bibr" rid="bib1.bibx24" id="paren.48"/>. The <monospace>nutUSpaldingWallFunction</monospace> boundary condition
for <inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is used for smooth walls. It computes a continuous <inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
profile to the wall based on Spalding's law <xref ref-type="bibr" rid="bib1.bibx40" id="paren.49"/>, which
is essentially a unified law of the wall which works for the viscous
sublayer, buffer layer, and the logarithmic region in a boundary layer.</p>
      <p id="d1e4514">The initial condition for <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">water</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is set to <inline-formula><mml:math id="M235" display="inline"><mml:mn mathvariant="normal">1</mml:mn></mml:math></inline-formula> for cells where
there is water at the beginning and to <inline-formula><mml:math id="M236" display="inline"><mml:mn mathvariant="normal">0</mml:mn></mml:math></inline-formula> for the rest. The initial values of
<inline-formula><mml:math id="M237" display="inline"><mml:mi mathvariant="bold">U</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M238" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mrow><mml:mi>r</mml:mi><mml:mi>g</mml:mi><mml:mi>h</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> were zero since the flow is initially at rest.
Although the fluid is at rest at the beginning, a small value of the
turbulent kinetic energy <inline-formula><mml:math id="M239" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> must be “seeded” in the domain, because the
production term in the governing equation of the turbulent kinetic energy <inline-formula><mml:math id="M240" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>
is zero and thus will produce no turbulence if initially <inline-formula><mml:math id="M241" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is 0.</p>
      <p id="d1e4587">In the 3-D model, the turbulent kinetic energy <inline-formula><mml:math id="M242" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is estimated from the
cross-shore velocity <inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, with a factor of <inline-formula><mml:math id="M244" display="inline"><mml:mn mathvariant="normal">1.25</mml:mn></mml:math></inline-formula> to take into account the
fact that turbulence is three-dimensional <xref ref-type="bibr" rid="bib1.bibx37" id="paren.50"/>: <inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>≈</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1.25</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msubsup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>′</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>. The velocity fluctuation <inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:msubsup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> is computed
from <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:mi>I</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow><mml:mi>U</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M248" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula> is the turbulence intensity, <inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:mfrac></mml:mstyle><mml:mo>(</mml:mo><mml:msubsup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>′</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mrow><mml:mo>′</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mrow><mml:mo>′</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:msqrt></mml:mrow></mml:math></inline-formula>, and
<inline-formula><mml:math id="M250" display="inline"><mml:mi>U</mml:mi></mml:math></inline-formula> can be chosen as wave celerity in this case. This approach is the same as
<xref ref-type="bibr" rid="bib1.bibx41" id="text.51"/> and <xref ref-type="bibr" rid="bib1.bibx19" id="text.52"/>. Several choices of initial
turbulence intensity were tested, and an turbulence intensity of <inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> is
chosen. For the specific dissipation rate, <inline-formula><mml:math id="M252" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:msqrt><mml:mi>k</mml:mi></mml:msqrt><mml:mi>l</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula> is used, where <inline-formula><mml:math id="M254" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula> is the turbulent length scale and is
set to <inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:mn mathvariant="normal">7</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> of the hydraulic diameter of the channel-like computational
domain, according to <xref ref-type="bibr" rid="bib1.bibx32" id="text.53"/>.</p>
      <?pagebreak page2498?><p id="d1e4815">Two computational meshes with refinement focused on different regions were
used during the simulation to mitigate computational demand. The first mesh
was used in the first phase, from the beginning of the simulation to the time
when the wave almost started to break. In this mesh, all buildings were
removed from the domain, leaving only the flat bottom of the wave basin,
which reduced the number of cells needed onshore significantly, allowing for
use of a much finer mesh offshore. The mesh size was approximately 0.08 m <inline-formula><mml:math id="M256" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.08 m <inline-formula><mml:math id="M257" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.01 m (length <inline-formula><mml:math id="M258" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> width <inline-formula><mml:math id="M259" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> height)
near the wave maker and was gradually reduced to 0.08 m <inline-formula><mml:math id="M260" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.08 m <inline-formula><mml:math id="M261" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.004 m onshore due to changes in topography. Note that the mesh
cells onshore seem to have large aspect ratio but there is no water onshore
at all during this time period. The second mesh was used until the end of
simulation. The buildings were added into the domain, and very fine mesh was
generated around the the onshore bathymetry. The mesh size was 0.3 m <inline-formula><mml:math id="M262" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.015 m <inline-formula><mml:math id="M263" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.035 m near the wave maker and refined to
0.0075 m <inline-formula><mml:math id="M264" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.0075 m <inline-formula><mml:math id="M265" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.0025 m near the flat bottom of
the onshore segment of the basin and at the edges and corners of the
buildings. It should be noted that this was only the size of a structured
background mesh, which was further refined by a factor of 2 and deformed by a
mesh tool, snappyHexMesh, from OpenFOAM near the buildings and seawalls to
make the mesh accurately represent the complex and irregular geometry of the
boundaries. Simulation results from the end of the first phase were mapped to
the second phase, and the simulation continued. This strategy is similar to
the dynamic AMR feature in the 2-D GeoClaw model.
Here, however, statically refined meshes were used instead of dynamically
refined grids as used in the 2-D GeoClaw model. The average Courant number across
the entire computational domain during these simulations is approximately
<inline-formula><mml:math id="M266" display="inline"><mml:mn mathvariant="normal">0.01</mml:mn></mml:math></inline-formula>. While this is considerably low for a typical analysis, this is due to
the fact that grid sizes vary by several orders of magnitude.</p>
</sec>
<sec id="Ch1.S4.SS2.SSS2">
  <title>GeoClaw model</title>
      <p id="d1e4902">With GeoClaw, it is possible to model the entire basin. Thus, the
computational domain is a <inline-formula><mml:math id="M267" display="inline"><mml:mn mathvariant="normal">48.8</mml:mn></mml:math></inline-formula> m by <inline-formula><mml:math id="M268" display="inline"><mml:mn mathvariant="normal">26.5</mml:mn></mml:math></inline-formula> m rectangle. The geometry of the
basin bottom and built environment is described by topography files of
different resolution, which specify <inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> on the right-hand side of
Eqs. (<xref ref-type="disp-formula" rid="Ch1.E2"/>) and (<xref ref-type="disp-formula" rid="Ch1.E3"/>). A typical wall time for one
simulation is approximately 6 h with a single core in an
Intel® Core™ i7-4790 CPU processor, which means the CPU time is also 6 h
(0.25 day). Note that the computational resources required by the GeoClaw
model are only <inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:mo>÷</mml:mo><mml:mn mathvariant="normal">640</mml:mn><mml:mo>≈</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2500</mml:mn></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula> of what is required by
the three-dimensional OpenFOAM model in this study.</p>
      <p id="d1e4962">To generate tsunami waves in GeoClaw, user-defined time-varying boundary
conditions can be specified at the inlet of the computational domain, based
on data for the wave maker speed <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:mi>s</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in the physical experiment. The data
from the physical experiment can be fit quite well with Eq. (<xref ref-type="disp-formula" rid="Ch1.E21"/>). However, the way we imposed velocity boundary conditions
at a fixed location rather than having a moving boundary, we found better
agreement with the observed wave at several offshore wave gauges by setting <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.6</mml:mn></mml:mrow></mml:math></inline-formula> in Eq. (<xref ref-type="disp-formula" rid="Ch1.E21"/>), which was therefore used for all
simulations.</p>
      <p id="d1e4995">The AMR feature of GeoClaw was used, with a mesh size for the base-level grid
of <inline-formula><mml:math id="M273" display="inline"><mml:mn mathvariant="normal">0.5</mml:mn></mml:math></inline-formula> m (corresponding to <inline-formula><mml:math id="M274" display="inline"><mml:mn mathvariant="normal">25</mml:mn></mml:math></inline-formula> m in full scale) in both cross-shore
direction and along-shore direction. The term cross-shore is used to refer to
the direction that the wave propagates from the wave maker to the structures
onshore, while the direction perpendicular to the cross-shore direction is
referred to as the along-shore direction. The mesh is refined in the
nearshore region up to four levels, with specified refinement ratios: <inline-formula><mml:math id="M275" display="inline"><mml:mn mathvariant="normal">4</mml:mn></mml:math></inline-formula> from
level <inline-formula><mml:math id="M276" display="inline"><mml:mn mathvariant="normal">1</mml:mn></mml:math></inline-formula> to <inline-formula><mml:math id="M277" display="inline"><mml:mn mathvariant="normal">2</mml:mn></mml:math></inline-formula>, <inline-formula><mml:math id="M278" display="inline"><mml:mn mathvariant="normal">5</mml:mn></mml:math></inline-formula> from level <inline-formula><mml:math id="M279" display="inline"><mml:mn mathvariant="normal">2</mml:mn></mml:math></inline-formula> to <inline-formula><mml:math id="M280" display="inline"><mml:mn mathvariant="normal">3</mml:mn></mml:math></inline-formula>, and <inline-formula><mml:math id="M281" display="inline"><mml:mn mathvariant="normal">2</mml:mn></mml:math></inline-formula> from level <inline-formula><mml:math id="M282" display="inline"><mml:mn mathvariant="normal">3</mml:mn></mml:math></inline-formula> to <inline-formula><mml:math id="M283" display="inline"><mml:mn mathvariant="normal">4</mml:mn></mml:math></inline-formula>.
The finest mesh in the domain with this setup for AMR is <inline-formula><mml:math id="M284" display="inline"><mml:mn mathvariant="normal">0.0125</mml:mn></mml:math></inline-formula> m by
<inline-formula><mml:math id="M285" display="inline"><mml:mn mathvariant="normal">0.0125</mml:mn></mml:math></inline-formula> m (corresponding to <inline-formula><mml:math id="M286" display="inline"><mml:mn mathvariant="normal">0.625</mml:mn></mml:math></inline-formula> m in full scale) and eventually covers
the entire onshore region. The desired Courant number is set to <inline-formula><mml:math id="M287" display="inline"><mml:mn mathvariant="normal">0.9</mml:mn></mml:math></inline-formula> to
guarantee the stability of the explicit numerical scheme.</p>
      <p id="d1e5105">One thing to be noted is that, for both numerical models described above, all
coastal structures, including different types of buildings and the seawall,
are assumed to be undamaged and thus fixed and rigid during the inundation.</p>
</sec>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Comparison of flow parameters</title>
      <p id="d1e5115">The predicted free-surface elevation, cross-shore velocity, and corresponding
momentum flux from the two numerical models will be compared and discussed in
this section. All experimental data in this study were provided by the NTHMP
Mapping and Modeling Benchmarking Workshop: Tsunami Currents
<xref ref-type="bibr" rid="bib1.bibx44" id="paren.54"/>, and descriptions of the physical experiments to
gather the data are provided by <xref ref-type="bibr" rid="bib1.bibx31" id="text.55"/> and <xref ref-type="bibr" rid="bib1.bibx36" id="text.56"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p id="d1e5129">Time histories of surface elevation, cross-shore velocity, and
momentum flux at some selected gauges along line A (note that ranges of
<inline-formula><mml:math id="M288" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis are different in different subplots).</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f08.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p id="d1e5147">Time histories of surface elevation, cross-shore velocity, and
momentum flux at some selected gauges along line B.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f09.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p id="d1e5159">Time histories of surface elevation, cross-shore velocity, and
momentum flux at some selected gauges along line C.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f10.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p id="d1e5170">Time histories of surface elevation, cross-shore velocity, and
momentum flux at some selected gauges in group D.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f11.png"/>

        </fig>

      <p id="d1e5179">Gauges were positioned as shown in
Figs. <xref ref-type="fig" rid="Ch1.F5"/>–<xref ref-type="fig" rid="Ch1.F7"/>. Ultra-sonic surface
wave gauges were used to measure the free surface. The bore front
propagation speed was obtained by analysis of imagery gathered by two
high-resolution video cameras located above the wave basin <xref ref-type="bibr" rid="bib1.bibx36" id="paren.57"/>.
Fluid velocity measurements were acquired by acoustic Doppler velocimeter
(ADV) only after peaks; air entrainment in the bore at and shortly after the
initial impact rendered the ADV measurements inconsistent in repeated trials
<xref ref-type="bibr" rid="bib1.bibx31" id="paren.58"/>. <xref ref-type="bibr" rid="bib1.bibx31" id="text.59"/> then assumed that the propagation speed
and fluid velocity at the bore front are equal and fit a second-order
polynomial to that value and ensemble-averaged ADV measurements in this
region.</p>
      <p id="d1e5195">Time histories of the free-surface elevation, cross-shore velocity, and
corresponding momentum flux at selected gauges are shown in Figs. <xref ref-type="fig" rid="Ch1.F8"/>–<xref ref-type="fig" rid="Ch1.F11"/>. After the peak
(initial impact), there appears to be a significant drop in discrepancies
between modeled and measured water level and fluid velocity; therefore, the
discussion that follows will separately compare the results before and after
the peak.</p>
<sec id="Ch1.S4.SS3.SSS1">
  <title>Onshore time series near initial impact</title>
      <p id="d1e5207">Water level amplitude by OpenFOAM and arrival time by both OpenFOAM and
GeoClaw agree fairly well with measurements at many of the gauges in groups
A, B, and C, but GeoClaw underestimates the amplitude at many gauges. These
differences reflect the challenge of modeling a turbulent and rapidly varying
bore front. An additional factor is that the gauges in groups A, B, and C are
placed along straight lines, representing roads within the community, whereas
those in group D are set behind buildings. As a consequence, flow around
group A, B, and C gauges is dominated by flow in the cross-shore direction,
while flow around group D gauges is more complex and challenging to model.</p>
      <?pagebreak page2499?><p id="d1e5210">Fluid velocity experimental values derived by optical means are significantly
lower than the modeled OpenFOAM and GeoClaw velocity in many of the 16 cases
presented in Figs. <xref ref-type="fig" rid="Ch1.F8"/>–<xref ref-type="fig" rid="Ch1.F11"/>.
This is because the optical measurement of the bore front is not necessarily
representative of flow velocity. Here the animation of GeoClaw numerical
results was analyzed to obtain estimates of 1.3 m s<inline-formula><mml:math id="M289" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for peak velocity: Fig. <xref ref-type="fig" rid="Ch1.F12"/> showed modeled velocity distributions in the
bore at two consecutive time steps in the GeoClaw simulation at gauge A4,
illustrating that the modeled maximum fluid velocity occurs at some point
behind the bore front.</p>
      <p id="d1e5231">Momentum flux modeled by OpenFOAM and GeoClaw do not agree well with
experimental estimates, due to the discrepancies in fluid velocity estimates,
discussed above. This is critical, since momentum flux is often used to
compute the tsunami forces on structure, as discussed in detail in Sect. <xref ref-type="sec" rid="Ch1.S5"/>.</p>
      <p id="d1e5236">In summary, predictions near the initial impact are challenging for both
models, but the three-dimensional OpenFOAM model performs better than the
two-dimensional<?pagebreak page2500?> GeoClaw model because it models turbulence and the variation
of velocity with depth.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12"><caption><p id="d1e5242">Velocity distribution in the bore near gauge A4, from the GeoClaw
model.</p></caption>
            <?xmltex \igopts{width=142.26378pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f12.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS3.SSS2">
  <title>Onshore time series in post-impact region</title>
      <p id="d1e5258">Water level agreement among both models and the experimental data is
significantly improved after initial impact. Note that some gauges are quite
far from the shoreline (for example, gauges A6, B8, and C8), where the inundation
depth is very shallow compared to the peak value near the shoreline (less
than <inline-formula><mml:math id="M290" display="inline"><mml:mrow><mml:mn mathvariant="normal">20</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> of the peak value). Even at these locations, however, both
numerical models provide reasonable predictions. It is also of interest that,
as noted above, GeoClaw predicts a lower bore front propagation speed than
OpenFOAM; as a result, arrival of the OpenFOAM bore front agrees well with
experiment, but the GeoClaw bore front is significantly delayed at gauges
farther inland, such as B8 and C8 (see Figs. <xref ref-type="fig" rid="Ch1.F9"/> and
<xref ref-type="fig" rid="Ch1.F10"/>).</p>
      <p id="d1e5276">Fluid velocity measurements by the ADV are more stable after 30 s, and both
OpenFOAM and GeoClaw velocity time series agree much better with the
experimental data at gauges in groups A, B, and C. Agreement does degrade
significantly<?pagebreak page2501?> in group D, especially in the case of GeoClaw; this is no doubt
due to the more complicated fluid flow in the group D environment, behind
buildings, compared to the relatively simpler cross-shore flow in the street
environments of groups A, B, and C (Fig. <xref ref-type="fig" rid="Ch1.F7"/>).</p>
      <p id="d1e5281">Momentum flux from both numerical models are in better agreement with the
measurements at most gauges, since water level and velocity agreements are
better than in the <inline-formula><mml:math id="M291" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">30</mml:mn></mml:mrow></mml:math></inline-formula> s time period.</p>
      <p id="d1e5296">Figure <xref ref-type="fig" rid="Ch1.F13"/> compares snapshots of the simulation near line A
from the two models at three different times. The three-dimensional model
provides substantial detail about the complex flow among buildings, including
the strong channeling effect along line A, aligned with the street, and among
the buildings on both sides of the street. These channeling effects can alter
the forces exerted on both sides of that street, so that any differences
between OpenFOAM and GeoClaw in modeling such effects may result in different
prediction of forces on the buildings.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S5">
  <title>Force predictions from momentum flux</title>
      <p id="d1e5309">Some representative buildings along line A were selected for preliminary
analysis of fluid forces on the coastal infrastructure, as shown in Fig. <xref ref-type="fig" rid="Ch1.F14"/>.
Building I is one of the two large<?pagebreak page2502?> structures adjacent to gauge A1. It directly
faces the shoreline, with dimensions of 0.29 m by 0.78 m by 0.246 m (length in cross-shore direction by length in
10 along-shore directions by height). Building II has dimensions of 0.39 m by 0.39 m by 0.091 m.
Buildings III and IV, representing small houses within the
community, are identical but placed in different directions, which have a
length, width, and height of <inline-formula><mml:math id="M292" display="inline"><mml:mn mathvariant="normal">0.17</mml:mn></mml:math></inline-formula> m, <inline-formula><mml:math id="M293" display="inline"><mml:mn mathvariant="normal">0.26</mml:mn></mml:math></inline-formula>, and <inline-formula><mml:math id="M294" display="inline"><mml:mn mathvariant="normal">0.154</mml:mn></mml:math></inline-formula> m.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13"><caption><p id="d1e5337">Snapshots of the simulation near line A, colored by cross-shore
velocity, at three different times (from top to bottom): <inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">25.9</mml:mn></mml:mrow></mml:math></inline-formula> s, <inline-formula><mml:math id="M296" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">27</mml:mn></mml:mrow></mml:math></inline-formula> s,
and <inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">28.1</mml:mn></mml:mrow></mml:math></inline-formula> s. <bold>(a, c, e)</bold> Geoclaw; <bold>(b, d, f)</bold> OpenFOAM.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f13.png"/>

      </fig>

      <p id="d1e5388">In terms of force measurements, the single-column case presented in Sect. <xref ref-type="sec" rid="Ch1.S3"/> was the only dataset available with experimental
measurements of wave impact forces on similar structures. Through validation
against that data, it was shown that, provided the water height and fluid
velocity are properly modeled, the fluid-induced forces could also be
properly predicted. This could be generally extrapolated and applied to the
Seaside problem, where the only available measured data included flow
parameters (water depth and velocity).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14"><caption><p id="d1e5396">Representative buildings along line A.</p></caption>
        <?xmltex \igopts{width=156.490157pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f14.png"/>

      </fig>

      <?pagebreak page2503?><p id="d1e5405">Figure <xref ref-type="fig" rid="Ch1.F15"/> shows predicted forces in the cross-shore
direction from the two models on selected buildings. Note that these forces
are normalized by the width of the western (left) wall of the buildings. Since no
pressure field exists in the two-dimensional GeoClaw model, the same approach
as was used in Sect. <xref ref-type="sec" rid="Ch1.S3"/> is applied here to compute forces on
these selected buildings for the GeoClaw model (<inline-formula><mml:math id="M298" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> chosen as <inline-formula><mml:math id="M299" display="inline"><mml:mn mathvariant="normal">2.0</mml:mn></mml:math></inline-formula> as
well). In this case, note that not all the buildings are removed to get the
momentum flux for a specific building. Instead, only the building at the
center of which the momentum flux is to be predicted is removed, with all
other constructed environment unchanged. This minimizes the influence of
removing that building on the flow overall.</p>
      <p id="d1e5430">Peak values of forces predicted by the GeoClaw model on all buildings are
only approximately half of those predicted by the OpenFOAM model, except for
building III. This indicates that this approach for predicting tsunami load
can be off by as large as <inline-formula><mml:math id="M300" display="inline"><mml:mrow><mml:mn mathvariant="normal">100</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> in such a complex scenario where multiple
objects are present, although it is recommended by FEMA P-646
(<xref ref-type="bibr" rid="bib1.bibx1" id="altparen.60"/>) as an empirical method when only
velocity and surface elevation map is available and is prevalent in tsunami
inundation problems.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15"><caption><p id="d1e5449">Predicted forces in cross-shore direction on selected buildings
(normalized).</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/18/2489/2018/nhess-18-2489-2018-f15.png"/>

      </fig>

</sec>
<sec id="Ch1.S6" sec-type="conclusions">
  <title>Conclusion and extensions</title>
      <p id="d1e5464">In this paper, two different types of numerical models of tsunami inundation
were developed and compared. They were first validated by comparing water
level, velocity profile, and forces on a single column impacted by a bore from
a dam break. Then the two models were used to predict free-surface elevation,
velocity, and momentum flux of a tsunami inundation on a model-scale
constructed environment. The predicted flow parameters agree well with
experimental measurements in the post-impact region at most gauges. During
initial impact, however, the two-dimensional GeoClaw model has difficulty in
capturing transient characteristic of the flow. The three-dimensional
OpenFOAM model can solve this challenge better, albeit at the expense of many
more computational resources being required. This is because the variation in the
vertical direction is “eliminated” by the integration in the two-dimensional
model, while all three-dimensional characteristics of the flow as well as
turbulence are modeled by the three-dimensional model. Several primary
conclusions can be drawn from this work:
<list list-type="order"><list-item>
      <p id="d1e5469">The three-dimensional RANS model can predict flow parameters and forces on
structures by modeling a subsection of <inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> of the width of the entire
basin, while the two-dimensional NSWE model can model the entire basin at one
time, with much less computational resources. Both models agree well with
experimental measurements at most locations considered after the initial
impact. The RANS model, however, can provide more details on the flow,
especially near the initial impact region.</p></list-item><list-item>
      <p id="d1e5485">The fluid dynamics in the bore front are transient and turbulent. Thus
near the initial impact, prediction of flow parameters and forces is
challenging but also the most critical since the flow parameters and forces
have maximum value near this point. The three-dimensional RANS model solves
this challenge better than the two-dimensional NSWE model but needs many more
computational resources.</p></list-item><list-item>
      <p id="d1e5489">Using the approach recommended by FEMA P-646 to predict fluid forces on
structures from the two-dimensional model works well in the simple case of
flow around a column but becomes less reliable in a complex constructed
environment. Although choosing a drag coefficient of <inline-formula><mml:math id="M302" display="inline"><mml:mn mathvariant="normal">2.0</mml:mn></mml:math></inline-formula> is considered
conservative, the 2-D model with this value was still seen to significantly
underestimate fluid forces (in some cases giving only half of the prediction
from the 3-D model as discussed in Sect. <xref ref-type="sec" rid="Ch1.S5"/>) because the 2-D
model underestimates peak velocities in this complex flow. For this reason,
it is recommended that a 3-D model should be used to determine the tsunami
loads on structures when possible, which eliminates the necessity of choosing
a large safety factor when only flow velocity is available from the 2-D model
as done in <xref ref-type="bibr" rid="bib1.bibx3" id="text.61"/>.</p></list-item></list></p>
      <p id="d1e5504">This research compares different characteristics of a two-dimensional model
and a three-dimensional model of tsunami inundation with the constructed
environment. Challenges in prediction of flow parameters and forces are
revealed, and the capabilities of the two numerical models in solving this
type of problem are analyzed. A trade-off needs to be made between the two
models due to their different levels of accuracy and required computational
resources. The comparisons in the current study can provide a reference when
choosing between a two-dimensional model and three-dimensional model to predict
required information in tsunami inundation.</p>
</sec>

      
      </body>
    <back><notes notes-type="codeavailability">

      <p id="d1e5511">The setups for both models described in the paper have been uploaded to
<ext-link xlink:href="https://doi.org/10.5281/zenodo.1419317" ext-link-type="DOI">10.5281/zenodo.1419317</ext-link> (Qin, 2018).</p>
  </notes><notes notes-type="authorcontribution">

      <p id="d1e5520">Xinsheng Qin was the primary modeler and author of this work. All co-authors provided assistance in
the modeling and subsequent interpretation of results.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e5526">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e5532">The authors would like to thank the National Science Foundation for their
financial support through grants EAR-1331412 and CMMI-1536198. This work was
facilitated through the use of advanced computational, storage, and
networking infrastructure provided by the Hyak supercomputer system.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: Maria Ana Baptista<?xmltex \hack{\newline}?>
Reviewed by: three anonymous referees</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Applied Technology Council(2012)</label><mixed-citation>Applied Technology Council: Guidelines for Design of Structures for Vertical
Evacuation from Tsunamis. Second Edition (FEMA P-646), FEMA P-646
Publication, <ext-link xlink:href="https://doi.org/10.1061/40978(313)7" ext-link-type="DOI">10.1061/40978(313)7</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx2"><?xmltex \def\ref@label{{{\'{A}}rnason(2005)}}?><label>Árnason(2005)</label><mixed-citation>
Árnason, H.: Interactions between an incident bore and a free-standing coastal structure, PhD thesis,
University of Washington, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Ash(2015)</label><mixed-citation>
Ash, C.: Design of a Tsunami Vertical Evacuation Refuge Structure in Westport, Washington, in:
Structures Congress, Portland, Oregon, USA, 23–25 April 2015, 1530–1537,
2015.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Bale et al.(2003)Bale, LeVeque, Mitran, and
Rossmanith</label><mixed-citation>
Bale, D. S., LeVeque, R. J., Mitran, S., and Rossmanith, J. A.: A wave
propagation method for conservation laws and balance laws with spatially
varying flux functions, SIAM J. Sci. Comput., 24, 955–978,
2003.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Berger and Leveque(1998)</label><mixed-citation>Berger, M. J. and Leveque, R. J.: Adaptive Mesh Refinement Using
Wave-Propagation Algorithms for Hyperbolic Systems, SIAM J.
Numer. Anal., 35, 2298–2316, <ext-link xlink:href="https://doi.org/10.1137/S0036142997315974" ext-link-type="DOI">10.1137/S0036142997315974</ext-link>, 1998.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Berger et al.(2011)Berger, George, LeVeque, and
Mandli</label><mixed-citation>
Berger, M. J., George, D. L., LeVeque, R. J., and Mandli, K. T.: The GeoClaw
software for depth-averaged flows with adaptive refinement, Adv. Water
Resour., 34, 1195–1206, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Biscarini(2010)</label><mixed-citation>
Biscarini, C.: Computational fluid dynamics modelling of landslide generated
water waves, Landslides, 7, 117–124, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Choi et al.(2007)Choi, Kim, Pelinovsky, and Woo</label><mixed-citation>Choi, B. H., Kim, D. C., Pelinovsky, E., and Woo, S. B.: Three-dimensional
simulation of tsunami run-up around conical island, Coast. Eng., 54,
618–629, <ext-link xlink:href="https://doi.org/10.1016/j.coastaleng.2007.02.001" ext-link-type="DOI">10.1016/j.coastaleng.2007.02.001</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Clawpack Development Team(2015)</label><mixed-citation>Clawpack Development Team: Clawpack software, version 5.3.1, available at:
<uri>http://www.clawpack.org</uri> (last access:  June 2018), 2015.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Einfeldt(1988)</label><mixed-citation>
Einfeldt, B.: On Godunov-type methods for gas dynamics, SIAM J.
Numer. Anal., 25, 294–318, 1988.</mixed-citation></ref>
      <ref id="bib1.bibx11"><?xmltex \def\ref@label{{Einfeldt et~al.(1991)Einfeldt, Munz, Roe, and
Sj{\"{o}}green}}?><label>Einfeldt et al.(1991)Einfeldt, Munz, Roe, and
Sjögreen</label><mixed-citation>
Einfeldt, B., Munz, C.-D., Roe, P. L., and Sjögreen, B.: On Godunov-type
methods near low densities, J. Comput. Phys., 92, 273–295,
1991.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>George(2008)</label><mixed-citation>
George, D. L.: Augmented Riemann solvers for the shallow water equations over
variable topography with steady states and inundation, J.
Comput. Phys., 227, 3089–3113, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx13"><?xmltex \def\ref@label{{Gonz{\'{a}}lez et~al.(2013)Gonz{\'{a}}lez, LeVeque, and
Adams}}?><label>González et al.(2013)González, LeVeque, and
Adams</label><mixed-citation>
González, F., LeVeque, R., and Adams, L.: Tsunami Hazard Assessment of the
Ocosta School Site in Westport, WA, Technical Report, Washington State Emergency Management Division, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Hirt and Nichols(1981)</label><mixed-citation>
Hirt, C. W. and Nichols, B. D.: Volume of fluid (VOF) method for the dynamics
of free boundaries, J. Comput. Phys., 39, 201–225, 1981.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Hu et al.(2000)Hu, Mingham, and Causon</label><mixed-citation>Hu, K., Mingham, C., and Causon, D.: Numerical simulation of wave overtopping
of coastal structures using the non-linear shallow water equations, Coast. Eng., 41, 433–465,
<ext-link xlink:href="https://doi.org/10.1016/S0378-3839(00)00040-5" ext-link-type="DOI">10.1016/S0378-3839(00)00040-5</ext-link>, 2000.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Hubbard and Dodd(2002)</label><mixed-citation>Hubbard, M. E. and Dodd, N.: A 2D numerical model of wave run-up and
overtopping, Coast. Eng., 47, 1–26,
<ext-link xlink:href="https://doi.org/10.1016/S0378-3839(02)00094-7" ext-link-type="DOI">10.1016/S0378-3839(02)00094-7</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>Larsen et al.(2017)Larsen, Fuhrman, Baykal, and
Sumer</label><mixed-citation>
Larsen, B. E., Fuhrman, D. R., Baykal, C., and Sumer, B. M.: Tsunami-induced
scour around monopile foundations, Coast. Eng., 129, 36–49, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx18"><label>LeVeque et al.(2011)LeVeque, George, and Berger</label><mixed-citation>
LeVeque, R. J., George, D. L., and Berger, M. J.: Tsunami modelling with
adaptively refined finite volume methods, Acta Numer., 20, 211–289, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>Lin and Liu(1998)</label><mixed-citation>Lin, P. and Liu, P. L. F.: A numerical study of breaking waves in the surf
zone, J. Fluid Mech., 359, 239–264,
<ext-link xlink:href="https://doi.org/10.1017/S002211209700846X" ext-link-type="DOI">10.1017/S002211209700846X</ext-link>, 1998.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Lynett(2007)</label><mixed-citation>Lynett, P. J.: Effect of a Shallow Water Obstruction on Long Wave Runup and
Overland Flow Velocity, J. Waterw. Port C., 133, 455–462,
<ext-link xlink:href="https://doi.org/10.1061/(ASCE)0733-950X(2007)133:6(455)" ext-link-type="DOI">10.1061/(ASCE)0733-950X(2007)133:6(455)</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx21"><label>Lynett et al.(2010)Lynett, Melby, and Kim</label><mixed-citation>Lynett, P. J., Melby, J. A., and Kim, D. H.: An application of Boussinesq
modeling to Hurricane wave overtopping and inundation, Ocean Eng.,
37, 135–153, <ext-link xlink:href="https://doi.org/10.1016/j.oceaneng.2009.08.021" ext-link-type="DOI">10.1016/j.oceaneng.2009.08.021</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>Mayer and Madsen(2000)</label><mixed-citation>
Mayer, S. and Madsen, P. A.: Simulation of Breaking Waves in the Surf Zone
using a Navier-Stokes Solver, Proceeding to Coast. Eng. Conference, I, Sydney, Australia, 16–21 July
2000,
928–941, 2000.</mixed-citation></ref>
      <ref id="bib1.bibx23"><label>Menter(1993)</label><mixed-citation>
Menter, F.: Zonal two equation k-turbulence models for aerodynamic flows,
AIAA paper, in: 23rd fluid dynamics, plasmadynamics, and lasers conference, Orlando, Florida, USA, July 1993, p. 2906, 1993.</mixed-citation></ref>
      <ref id="bib1.bibx24"><label>Menter and Esch(2001)</label><mixed-citation>
Menter, F. and Esch, T.: Elements of Industrial Heat Transfer Predictions,
16th Brazilian Congress of Mechanical Engineering (COBEM) Uberlândia, Minas Gerais, Brazil,  26–30 November 2011, 117–127,
2001.</mixed-citation></ref>
      <ref id="bib1.bibx25"><label>Menter et al.(2003)Menter, Kuntz, and Langtry</label><mixed-citation>
Menter, F. R., Kuntz, M., and Langtry, R.: Ten Years of Industrial Experience
with the SST Turbulence Model, Turbulence Heat and Mass Transfer, 4,
625–632, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx26"><label>Montagna et al.(2011)Montagna, Bellotti, and
Di Risio</label><mixed-citation>
Montagna, F., Bellotti, G., and Di Risio, M.: 3D numerical modeling of
landslide-generated tsunamis around a conical island, Nat. Hazards, 58,
591–608, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx27"><label>Motley et al.(2014)Motley, Lemoine, and
Livermore</label><mixed-citation>
Motley, M., Lemoine, G., and Livermore, S.: Three Dimensional Loading Effects
of Tsunamis on Bridge Superstructures, ASCE Structures Congress 2014, Boston, Massachusetts, USA, 3–5 April
2014,
1348–1358, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx28"><label>Motley et al.(2015)Motley, Wong, Qin, Winter, and
Eberhard</label><mixed-citation>Motley, M. R., Wong, H. K., Qin, X., Winter, A. O., and Eberhard, M. O.:
Tsunami-Induced Forces on Skewed Bridges, J. Waterw. Port C., 142, 04015025,
<ext-link xlink:href="https://doi.org/10.1061/(ASCE)WW.1943-5460.0000328" ext-link-type="DOI">10.1061/(ASCE)WW.1943-5460.0000328</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx29"><label>Muhari et al.(2011)Muhari, Imamura, Koshimura, and Post</label><mixed-citation>Muhari, A., Imamura, F., Koshimura, S., and Post, J.: Examination of three
practical run-up models for assessing tsunami impact on highly populated
areas, Nat. Hazards Earth Syst. Sci., 11, 3107–3123,
<ext-link xlink:href="https://doi.org/10.5194/nhess-11-3107-2011" ext-link-type="DOI">10.5194/nhess-11-3107-2011</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx30"><label>Ozer Sozdinler et al.(2015)Ozer Sozdinler, Yalciner, and
Zaytsev</label><mixed-citation>Ozer Sozdinler, C., Yalciner, A. C., and Zaytsev, A.: Investigation of
Tsunami Hydrodynamic Parameters in Inundation Zones with Different Structural
Layouts, Pure Appl. Geophys., 172, 931–952,
<ext-link xlink:href="https://doi.org/10.1007/s00024-014-0947-z" ext-link-type="DOI">10.1007/s00024-014-0947-z</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx31"><label>Park et al.(2013)Park, Cox, Lynett, Wiebe, and Shin</label><mixed-citation>Park, H., Cox, D. T., Lynett, P. J., Wiebe, D. M., and Shin, S.: Tsunami
inundation modeling in constructed environments: A physical and numerical
comparison of free-surface elevation, velocity, and momentum flux, Coast.
Eng., 79, 9–21, <ext-link xlink:href="https://doi.org/10.1016/j.coastaleng.2013.04.002" ext-link-type="DOI">10.1016/j.coastaleng.2013.04.002</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx32"><label>Pope(2000)</label><mixed-citation>Pope, S. B.: Turbulent flows, Cambridge University Press, <ext-link xlink:href="https://doi.org/10.1017/CBO9780511840531" ext-link-type="DOI">10.1017/CBO9780511840531</ext-link> 2000.</mixed-citation></ref>
      <ref id="bib1.bibx33"><label>Popinet(2012)</label><mixed-citation>Popinet, S.: Adaptive modelling of long-distance wave propagation and
fine-scale flooding during the Tohoku tsunami, Nat. Hazards Earth Syst. Sci.,
12, 1213–1227, <ext-link xlink:href="https://doi.org/10.5194/nhess-12-1213-2012" ext-link-type="DOI">10.5194/nhess-12-1213-2012</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib1"><label>1</label><mixed-citation>Qin, X.: Model setups for the paper: A comparison of a two-dimensional depth averaged flow model and a three-dimensional RANS model for predicting tsunami inundation and fluid
forces, <ext-link xlink:href="https://doi.org/10.5281/zenodo.1419317" ext-link-type="DOI">10.5281/zenodo.1419317</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx34"><label>Qin et al.(2018)Qin, Motley, and Marafi</label><mixed-citation>
Qin, X., Motley, M. R., and Marafi, N.: Three-dimensional modeling of tsunami
forces on coastal communities, Coast. Eng., 140, 43–59, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx35"><label>Roe(1981)</label><mixed-citation>
Roe, P. L.: Approximate Riemann solvers, parameter vectors, and difference
schemes, J. Comput. Phys., 43, 357–372, 1981.</mixed-citation></ref>
      <ref id="bib1.bibx36"><label>Rueben et al.(2011)Rueben, Holman, Cox, Shin, Killian, and
Stanley</label><mixed-citation>Rueben, M., Holman, R., Cox, D., Shin, S., Killian, J., and Stanley, J.:
Optical measurements of tsunami inundation through an urban waterfront
modeled in a large-scale laboratory basin, Coast. Eng., 58,
229–238, <ext-link xlink:href="https://doi.org/10.1016/j.coastaleng.2010.10.005" ext-link-type="DOI">10.1016/j.coastaleng.2010.10.005</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx37"><label>Scott et al.(2005)Scott, Cox, Maddux, and Long</label><mixed-citation>
Scott, C. P., Cox, D. T., Maddux, T. B., and Long, J. W.: Large-scale
laboratory observations of turbulence on a fixed barred beach, Meas. Sci.
Technol., 16, 1903, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx38"><label>Shi et al.(2012)Shi, Kirby, Harris, Geiman, and Grilli</label><mixed-citation>Shi, F., Kirby, J. T., Harris, J. C., Geiman, J. D., and Grilli, S. T.: A
high-order adaptive time-stepping TVD solver for Boussinesq modeling of
breaking waves and coastal inundation, Ocean Model., 43–44, 36–51,
<ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2011.12.004" ext-link-type="DOI">10.1016/j.ocemod.2011.12.004</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx39"><label>Shin et al.(2012)Shin, Lee, Park, Cox, and Kim</label><mixed-citation>Shin, S., Lee, K.-H., Park, H., Cox, D. T., and Kim, K.: Influence of a
Infrastructure on Tsunami Inundation in a Coastal City, Coast. Eng., 1,
<ext-link xlink:href="https://doi.org/10.9753/icce.v33.currents.8" ext-link-type="DOI">10.9753/icce.v33.currents.8</ext-link>,
2012.</mixed-citation></ref>
      <ref id="bib1.bibx40"><label>Spalding(1961)</label><mixed-citation>
Spalding, D.: A single formula for the “law of the wall”, J. Appl. Mech.,
28, 455–458, 1961.</mixed-citation></ref>
      <ref id="bib1.bibx41"><label>Svendsen(1987)</label><mixed-citation>Svendsen, I. A.: Analysis of surf zone turbulence, J. Geophys.
Res.-Oceans, 92, 5115–5124, <ext-link xlink:href="https://doi.org/10.1029/JC092iC05p05115" ext-link-type="DOI">10.1029/JC092iC05p05115</ext-link>, 1987.</mixed-citation></ref>
      <ref id="bib1.bibx42"><label>The OpenFOAM Foundation(2014)</label><mixed-citation>The OpenFOAM Foundation: OpenFOAM v2.3.1, available at:
<uri>https://openfoam.org/release/2-3-1/</uri> (last access: September 2018), 2014.</mixed-citation></ref>
      <ref id="bib1.bibx43"><label>Tsunami Pilot Study Working Group(2006)</label><mixed-citation>Tsunami Pilot Study Working Group: Seaside, Oregon Tsunami Pilot Study –
modernization of FEMA flood hazard maps,<?pagebreak page2506?> Technical Report, NOAA OAR Special Report, NOAA/OAR/PMEL, Seattle, WA, 94 pp. + 7
appendices, available at: <uri>http://archives.pdx.edu/ds/psu/8333</uri>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx44"><label>University of Southern California(2015)</label><mixed-citation>University of Southern California: NTHMP Mapping and Modeling Benchmarking
Wrokshop: Tsunami Currents, Portland, Oregon, 9–10 February 2015, available at:
<uri>http://coastal.usc.edu/currents_workshop/</uri> (last access: September 2018), 2015.</mixed-citation></ref>
      <ref id="bib1.bibx45"><label>Versteeg and Malalasekera(2011)</label><mixed-citation>
Versteeg, H. K. and Malalasekera, W. W.: An introduction to computational
fluid dynamics: the finite volume method, Pearson Education Ltd,
2011.</mixed-citation></ref>
      <ref id="bib1.bibx46"><label>Wei et al.(2013)Wei, Chamberlin, Titov, Tang, and Bernard</label><mixed-citation>Wei, Y., Chamberlin, C., Titov, V. V., Tang, L., and Bernard, E. N.: Modeling
of the 2011 Japan Tsunami: Lessons for Near-Field Forecast, Pure Appl.
Geophys., 170, 1309–1331, <ext-link xlink:href="https://doi.org/10.1007/s00024-012-0519-z" ext-link-type="DOI">10.1007/s00024-012-0519-z</ext-link>, 2013.
</mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bibx47"><label>Williams and Fuhrman(2016)</label><mixed-citation>Williams, I. A. and Fuhrman, D. R.: Numerical simulation of tsunami-scale
wave boundary layers, Coast. Eng., 110, 17–31,
<ext-link xlink:href="https://doi.org/10.1016/j.coastaleng.2015.12.002" ext-link-type="DOI">10.1016/j.coastaleng.2015.12.002</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx48"><label>Wong(2015)</label><mixed-citation>Wong, H. K.: Three-Dimensional Effects of Tsunami Impact on Bridges, Master
thesis, University of Washington, available at: <uri>https://digital.lib.washington.edu/researchworks/handle/1773/33666</uri> (last access: September 2018), 2015.</mixed-citation></ref>
      <ref id="bib1.bibx49"><label>Yakhot et al.(1992)Yakhot, Orszag, Thangam, Gatski, and
Speziale</label><mixed-citation>
Yakhot, V., Orszag, S., Thangam, S., Gatski, T., and Speziale, C.:
Development of turbulence models for shear flows by a double expansion
technique, Phys. Fluids A-Fluid, 4, 1510–1520, 1992.</mixed-citation></ref>

  </ref-list></back>
    <!--<article-title-html>A comparison of a two-dimensional depth-averaged flow model and a three-dimensional RANS model for predicting tsunami inundation and fluid forces</article-title-html>
<abstract-html><p>The numerical modeling of tsunami inundation that
incorporates the built environment of coastal communities is challenging for
both 2-D and 3-D depth-integrated models, not only in modeling the flow but
also in predicting forces on coastal structures. For depth-integrated 2-D
models, inundation and flooding in this region can be very complex with
variation in the vertical direction caused by wave breaking on shore and
interactions with the built environment, and the model may not be able to
produce enough detail. For 3-D models, a very fine mesh is required to
properly capture the physics, dramatically increasing the computational cost
and rendering impractical the modeling of some problems. In this paper,
comparisons are made between GeoClaw, a depth-integrated 2-D model based on
the nonlinear shallow-water equations (NSWEs), and OpenFOAM, a 3-D model based
on Reynolds-averaged Navier–Stokes (RANS) equation for tsunami inundation
modeling. The two models were first validated against existing experimental
data of a bore impinging onto a single square column. Then they were used to
simulate tsunami inundation of a physical model of Seaside, Oregon. The
resulting flow parameters from the models are compared and discussed, and
these results are used to extrapolate tsunami-induced force predictions. It
was found that the 2-D model did not accurately capture the important details
of the flow near initial impact due to the transiency and large vertical
variation of the flow. Tuning the drag coefficient of the 2-D model worked
well to predict tsunami forces on structures in simple cases, but this
approach was not always reliable in complicated cases. The 3-D model was able
to capture transient characteristic of the flow, but at a much higher
computational cost; it was found this cost can be alleviated by subdividing
the region into reasonably sized subdomains without loss of accuracy in
critical regions.</p></abstract-html>
<ref-html id="bib1.bib1"><label>Applied Technology Council(2012)</label><mixed-citation>
Applied Technology Council: Guidelines for Design of Structures for Vertical
Evacuation from Tsunamis. Second Edition (FEMA P-646), FEMA P-646
Publication, <a href="https://doi.org/10.1061/40978(313)7" target="_blank">https://doi.org/10.1061/40978(313)7</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>Árnason(2005)</label><mixed-citation>
Árnason, H.: Interactions between an incident bore and a free-standing coastal structure, PhD thesis,
University of Washington, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Ash(2015)</label><mixed-citation>
Ash, C.: Design of a Tsunami Vertical Evacuation Refuge Structure in Westport, Washington, in:
Structures Congress, Portland, Oregon, USA, 23–25 April 2015, 1530–1537,
2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Bale et al.(2003)Bale, LeVeque, Mitran, and
Rossmanith</label><mixed-citation>
Bale, D. S., LeVeque, R. J., Mitran, S., and Rossmanith, J. A.: A wave
propagation method for conservation laws and balance laws with spatially
varying flux functions, SIAM J. Sci. Comput., 24, 955–978,
2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Berger and Leveque(1998)</label><mixed-citation>
Berger, M. J. and Leveque, R. J.: Adaptive Mesh Refinement Using
Wave-Propagation Algorithms for Hyperbolic Systems, SIAM J.
Numer. Anal., 35, 2298–2316, <a href="https://doi.org/10.1137/S0036142997315974" target="_blank">https://doi.org/10.1137/S0036142997315974</a>, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Berger et al.(2011)Berger, George, LeVeque, and
Mandli</label><mixed-citation>
Berger, M. J., George, D. L., LeVeque, R. J., and Mandli, K. T.: The GeoClaw
software for depth-averaged flows with adaptive refinement, Adv. Water
Resour., 34, 1195–1206, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>Biscarini(2010)</label><mixed-citation>
Biscarini, C.: Computational fluid dynamics modelling of landslide generated
water waves, Landslides, 7, 117–124, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>Choi et al.(2007)Choi, Kim, Pelinovsky, and Woo</label><mixed-citation>
Choi, B. H., Kim, D. C., Pelinovsky, E., and Woo, S. B.: Three-dimensional
simulation of tsunami run-up around conical island, Coast. Eng., 54,
618–629, <a href="https://doi.org/10.1016/j.coastaleng.2007.02.001" target="_blank">https://doi.org/10.1016/j.coastaleng.2007.02.001</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Clawpack Development Team(2015)</label><mixed-citation>
Clawpack Development Team: Clawpack software, version 5.3.1, available at:
<a href="http://www.clawpack.org" target="_blank">http://www.clawpack.org</a> (last access:  June 2018), 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Einfeldt(1988)</label><mixed-citation>
Einfeldt, B.: On Godunov-type methods for gas dynamics, SIAM J.
Numer. Anal., 25, 294–318, 1988.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Einfeldt et al.(1991)Einfeldt, Munz, Roe, and
Sjögreen</label><mixed-citation>
Einfeldt, B., Munz, C.-D., Roe, P. L., and Sjögreen, B.: On Godunov-type
methods near low densities, J. Comput. Phys., 92, 273–295,
1991.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>George(2008)</label><mixed-citation>
George, D. L.: Augmented Riemann solvers for the shallow water equations over
variable topography with steady states and inundation, J.
Comput. Phys., 227, 3089–3113, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>González et al.(2013)González, LeVeque, and
Adams</label><mixed-citation>
González, F., LeVeque, R., and Adams, L.: Tsunami Hazard Assessment of the
Ocosta School Site in Westport, WA, Technical Report, Washington State Emergency Management Division, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Hirt and Nichols(1981)</label><mixed-citation>
Hirt, C. W. and Nichols, B. D.: Volume of fluid (VOF) method for the dynamics
of free boundaries, J. Comput. Phys., 39, 201–225, 1981.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Hu et al.(2000)Hu, Mingham, and Causon</label><mixed-citation>
Hu, K., Mingham, C., and Causon, D.: Numerical simulation of wave overtopping
of coastal structures using the non-linear shallow water equations, Coast. Eng., 41, 433–465,
<a href="https://doi.org/10.1016/S0378-3839(00)00040-5" target="_blank">https://doi.org/10.1016/S0378-3839(00)00040-5</a>, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Hubbard and Dodd(2002)</label><mixed-citation>
Hubbard, M. E. and Dodd, N.: A 2D numerical model of wave run-up and
overtopping, Coast. Eng., 47, 1–26,
<a href="https://doi.org/10.1016/S0378-3839(02)00094-7" target="_blank">https://doi.org/10.1016/S0378-3839(02)00094-7</a>, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>Larsen et al.(2017)Larsen, Fuhrman, Baykal, and
Sumer</label><mixed-citation>
Larsen, B. E., Fuhrman, D. R., Baykal, C., and Sumer, B. M.: Tsunami-induced
scour around monopile foundations, Coast. Eng., 129, 36–49, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>LeVeque et al.(2011)LeVeque, George, and Berger</label><mixed-citation>
LeVeque, R. J., George, D. L., and Berger, M. J.: Tsunami modelling with
adaptively refined finite volume methods, Acta Numer., 20, 211–289, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>Lin and Liu(1998)</label><mixed-citation>
Lin, P. and Liu, P. L. F.: A numerical study of breaking waves in the surf
zone, J. Fluid Mech., 359, 239–264,
<a href="https://doi.org/10.1017/S002211209700846X" target="_blank">https://doi.org/10.1017/S002211209700846X</a>, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>Lynett(2007)</label><mixed-citation>
Lynett, P. J.: Effect of a Shallow Water Obstruction on Long Wave Runup and
Overland Flow Velocity, J. Waterw. Port C., 133, 455–462,
<a href="https://doi.org/10.1061/(ASCE)0733-950X(2007)133:6(455)" target="_blank">https://doi.org/10.1061/(ASCE)0733-950X(2007)133:6(455)</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>Lynett et al.(2010)Lynett, Melby, and Kim</label><mixed-citation>
Lynett, P. J., Melby, J. A., and Kim, D. H.: An application of Boussinesq
modeling to Hurricane wave overtopping and inundation, Ocean Eng.,
37, 135–153, <a href="https://doi.org/10.1016/j.oceaneng.2009.08.021" target="_blank">https://doi.org/10.1016/j.oceaneng.2009.08.021</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>Mayer and Madsen(2000)</label><mixed-citation>
Mayer, S. and Madsen, P. A.: Simulation of Breaking Waves in the Surf Zone
using a Navier-Stokes Solver, Proceeding to Coast. Eng. Conference, I, Sydney, Australia, 16–21 July
2000,
928–941, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>Menter(1993)</label><mixed-citation>
Menter, F.: Zonal two equation k-turbulence models for aerodynamic flows,
AIAA paper, in: 23rd fluid dynamics, plasmadynamics, and lasers conference, Orlando, Florida, USA, July 1993, p. 2906, 1993.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>Menter and Esch(2001)</label><mixed-citation>
Menter, F. and Esch, T.: Elements of Industrial Heat Transfer Predictions,
16th Brazilian Congress of Mechanical Engineering (COBEM) Uberlândia, Minas Gerais, Brazil,  26–30 November 2011, 117–127,
2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>Menter et al.(2003)Menter, Kuntz, and Langtry</label><mixed-citation>
Menter, F. R., Kuntz, M., and Langtry, R.: Ten Years of Industrial Experience
with the SST Turbulence Model, Turbulence Heat and Mass Transfer, 4,
625–632, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>Montagna et al.(2011)Montagna, Bellotti, and
Di Risio</label><mixed-citation>
Montagna, F., Bellotti, G., and Di Risio, M.: 3D numerical modeling of
landslide-generated tsunamis around a conical island, Nat. Hazards, 58,
591–608, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>Motley et al.(2014)Motley, Lemoine, and
Livermore</label><mixed-citation>
Motley, M., Lemoine, G., and Livermore, S.: Three Dimensional Loading Effects
of Tsunamis on Bridge Superstructures, ASCE Structures Congress 2014, Boston, Massachusetts, USA, 3–5 April
2014,
1348–1358, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>Motley et al.(2015)Motley, Wong, Qin, Winter, and
Eberhard</label><mixed-citation>
Motley, M. R., Wong, H. K., Qin, X., Winter, A. O., and Eberhard, M. O.:
Tsunami-Induced Forces on Skewed Bridges, J. Waterw. Port C., 142, 04015025,
<a href="https://doi.org/10.1061/(ASCE)WW.1943-5460.0000328" target="_blank">https://doi.org/10.1061/(ASCE)WW.1943-5460.0000328</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>Muhari et al.(2011)Muhari, Imamura, Koshimura, and Post</label><mixed-citation>
Muhari, A., Imamura, F., Koshimura, S., and Post, J.: Examination of three
practical run-up models for assessing tsunami impact on highly populated
areas, Nat. Hazards Earth Syst. Sci., 11, 3107–3123,
<a href="https://doi.org/10.5194/nhess-11-3107-2011" target="_blank">https://doi.org/10.5194/nhess-11-3107-2011</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>Ozer Sozdinler et al.(2015)Ozer Sozdinler, Yalciner, and
Zaytsev</label><mixed-citation>
Ozer Sozdinler, C., Yalciner, A. C., and Zaytsev, A.: Investigation of
Tsunami Hydrodynamic Parameters in Inundation Zones with Different Structural
Layouts, Pure Appl. Geophys., 172, 931–952,
<a href="https://doi.org/10.1007/s00024-014-0947-z" target="_blank">https://doi.org/10.1007/s00024-014-0947-z</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>Park et al.(2013)Park, Cox, Lynett, Wiebe, and Shin</label><mixed-citation>
Park, H., Cox, D. T., Lynett, P. J., Wiebe, D. M., and Shin, S.: Tsunami
inundation modeling in constructed environments: A physical and numerical
comparison of free-surface elevation, velocity, and momentum flux, Coast.
Eng., 79, 9–21, <a href="https://doi.org/10.1016/j.coastaleng.2013.04.002" target="_blank">https://doi.org/10.1016/j.coastaleng.2013.04.002</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>Pope(2000)</label><mixed-citation>
Pope, S. B.: Turbulent flows, Cambridge University Press, <a href="https://doi.org/10.1017/CBO9780511840531" target="_blank">https://doi.org/10.1017/CBO9780511840531</a> 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>Popinet(2012)</label><mixed-citation>
Popinet, S.: Adaptive modelling of long-distance wave propagation and
fine-scale flooding during the Tohoku tsunami, Nat. Hazards Earth Syst. Sci.,
12, 1213–1227, <a href="https://doi.org/10.5194/nhess-12-1213-2012" target="_blank">https://doi.org/10.5194/nhess-12-1213-2012</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>1</label><mixed-citation>
Qin, X.: Model setups for the paper: A comparison of a two-dimensional depth averaged flow model and a three-dimensional RANS model for predicting tsunami inundation and fluid
forces, <a href="https://doi.org/10.5281/zenodo.1419317" target="_blank">https://doi.org/10.5281/zenodo.1419317</a>, 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>Qin et al.(2018)Qin, Motley, and Marafi</label><mixed-citation>
Qin, X., Motley, M. R., and Marafi, N.: Three-dimensional modeling of tsunami
forces on coastal communities, Coast. Eng., 140, 43–59, 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>Roe(1981)</label><mixed-citation>
Roe, P. L.: Approximate Riemann solvers, parameter vectors, and difference
schemes, J. Comput. Phys., 43, 357–372, 1981.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>Rueben et al.(2011)Rueben, Holman, Cox, Shin, Killian, and
Stanley</label><mixed-citation>
Rueben, M., Holman, R., Cox, D., Shin, S., Killian, J., and Stanley, J.:
Optical measurements of tsunami inundation through an urban waterfront
modeled in a large-scale laboratory basin, Coast. Eng., 58,
229–238, <a href="https://doi.org/10.1016/j.coastaleng.2010.10.005" target="_blank">https://doi.org/10.1016/j.coastaleng.2010.10.005</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>Scott et al.(2005)Scott, Cox, Maddux, and Long</label><mixed-citation>
Scott, C. P., Cox, D. T., Maddux, T. B., and Long, J. W.: Large-scale
laboratory observations of turbulence on a fixed barred beach, Meas. Sci.
Technol., 16, 1903, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>Shi et al.(2012)Shi, Kirby, Harris, Geiman, and Grilli</label><mixed-citation>
Shi, F., Kirby, J. T., Harris, J. C., Geiman, J. D., and Grilli, S. T.: A
high-order adaptive time-stepping TVD solver for Boussinesq modeling of
breaking waves and coastal inundation, Ocean Model., 43–44, 36–51,
<a href="https://doi.org/10.1016/j.ocemod.2011.12.004" target="_blank">https://doi.org/10.1016/j.ocemod.2011.12.004</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>Shin et al.(2012)Shin, Lee, Park, Cox, and Kim</label><mixed-citation>
Shin, S., Lee, K.-H., Park, H., Cox, D. T., and Kim, K.: Influence of a
Infrastructure on Tsunami Inundation in a Coastal City, Coast. Eng., 1,
<a href="https://doi.org/10.9753/icce.v33.currents.8" target="_blank">https://doi.org/10.9753/icce.v33.currents.8</a>,
2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>Spalding(1961)</label><mixed-citation>
Spalding, D.: A single formula for the “law of the wall”, J. Appl. Mech.,
28, 455–458, 1961.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>Svendsen(1987)</label><mixed-citation>
Svendsen, I. A.: Analysis of surf zone turbulence, J. Geophys.
Res.-Oceans, 92, 5115–5124, <a href="https://doi.org/10.1029/JC092iC05p05115" target="_blank">https://doi.org/10.1029/JC092iC05p05115</a>, 1987.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>The OpenFOAM Foundation(2014)</label><mixed-citation>
The OpenFOAM Foundation: OpenFOAM v2.3.1, available at:
<a href="https://openfoam.org/release/2-3-1/" target="_blank">https://openfoam.org/release/2-3-1/</a> (last access: September 2018), 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>Tsunami Pilot Study Working Group(2006)</label><mixed-citation>
Tsunami Pilot Study Working Group: Seaside, Oregon Tsunami Pilot Study –
modernization of FEMA flood hazard maps, Technical Report, NOAA OAR Special Report, NOAA/OAR/PMEL, Seattle, WA, 94 pp. + 7
appendices, available at: <a href="http://archives.pdx.edu/ds/psu/8333" target="_blank">http://archives.pdx.edu/ds/psu/8333</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>University of Southern California(2015)</label><mixed-citation>
University of Southern California: NTHMP Mapping and Modeling Benchmarking
Wrokshop: Tsunami Currents, Portland, Oregon, 9–10 February 2015, available at:
<a href="http://coastal.usc.edu/currents_workshop/" target="_blank">http://coastal.usc.edu/currents_workshop/</a> (last access: September 2018), 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>Versteeg and Malalasekera(2011)</label><mixed-citation>
Versteeg, H. K. and Malalasekera, W. W.: An introduction to computational
fluid dynamics: the finite volume method, Pearson Education Ltd,
2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>Wei et al.(2013)Wei, Chamberlin, Titov, Tang, and Bernard</label><mixed-citation>
Wei, Y., Chamberlin, C., Titov, V. V., Tang, L., and Bernard, E. N.: Modeling
of the 2011 Japan Tsunami: Lessons for Near-Field Forecast, Pure Appl.
Geophys., 170, 1309–1331, <a href="https://doi.org/10.1007/s00024-012-0519-z" target="_blank">https://doi.org/10.1007/s00024-012-0519-z</a>, 2013.

</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>Williams and Fuhrman(2016)</label><mixed-citation>
Williams, I. A. and Fuhrman, D. R.: Numerical simulation of tsunami-scale
wave boundary layers, Coast. Eng., 110, 17–31,
<a href="https://doi.org/10.1016/j.coastaleng.2015.12.002" target="_blank">https://doi.org/10.1016/j.coastaleng.2015.12.002</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>Wong(2015)</label><mixed-citation>
Wong, H. K.: Three-Dimensional Effects of Tsunami Impact on Bridges, Master
thesis, University of Washington, available at: <a href="https://digital.lib.washington.edu/researchworks/handle/1773/33666" target="_blank">https://digital.lib.washington.edu/researchworks/handle/1773/33666</a> (last access: September 2018), 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>Yakhot et al.(1992)Yakhot, Orszag, Thangam, Gatski, and
Speziale</label><mixed-citation>
Yakhot, V., Orszag, S., Thangam, S., Gatski, T., and Speziale, C.:
Development of turbulence models for shear flows by a double expansion
technique, Phys. Fluids A-Fluid, 4, 1510–1520, 1992.
</mixed-citation></ref-html>--></article>
