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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">NHESS</journal-id>
<journal-title-group>
<journal-title>Natural Hazards and Earth System Sciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">NHESS</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Nat. Hazards Earth Syst. Sci.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1684-9981</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/nhess-17-197-2017</article-id><title-group><article-title>The role of EMODnet Chemistry in the European challenge for Good
Environmental Status</article-title>
      </title-group><?xmltex \runningtitle{The role of EMODnet Chemistry for Good Environmental Status}?><?xmltex \runningauthor{M.~Vinci et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Vinci</surname><given-names>Matteo</given-names></name>
          <email>mvinci@inogs.it</email>
        <ext-link>https://orcid.org/0000-0003-1238-4083</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Giorgetti</surname><given-names>Alessandra</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Lipizer</surname><given-names>Marina</given-names></name>
          
        </contrib>
        <aff id="aff1"><institution>OGS (Istituto Nazionale di Oceanografia e di Geofisica Sperimentale)
Borgo Grotta Gigante 42/C,<?xmltex \hack{\newline}?> 34010, Sgonico (TS), Italy</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Matteo Vinci (mvinci@inogs.it)</corresp></author-notes><pub-date><day>15</day><month>February</month><year>2017</year></pub-date>
      
      <volume>17</volume>
      <issue>2</issue>
      <fpage>197</fpage><lpage>204</lpage>
      <history>
        <date date-type="received"><day>22</day><month>June</month><year>2016</year></date>
           <date date-type="rev-request"><day>25</day><month>July</month><year>2016</year></date>
           <date date-type="rev-recd"><day>14</day><month>December</month><year>2016</year></date>
           <date date-type="accepted"><day>10</day><month>January</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017.html">This article is available from https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017.html</self-uri>
<self-uri xlink:href="https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017.pdf">The full text article is available as a PDF file from https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017.pdf</self-uri>


      <abstract>
    <p>The
European Union set the ambitious objective to reach within 2020 the goal of
Good Environmental Status. The European Commission (2008)
represents the legislative framework that drives member state efforts to
reach it. The Integrated Maritime Policy supported the need to provide a
European knowledge base able to drive sustainable development by launching in
2009 a new European Marine Observation and Data Network (EMODnet). Through a
stepwise approach, EMODnet Chemistry aims to provide high-quality marine
environmental data and related products at the scale of regions and
sub-regions defined by the Marine Strategy Framework Directive. The chemistry
lot takes advantage and further develops the SeaDataNet pan-European
infrastructure and the distributed approach, linking together a network of
more than 100 National Oceanographic Data Centres providing data from more
than 500 data originators. The close interaction with EEA, RSCs, ICES and EMODnet–MSFD coordination group facilitated the identification of the most appropriate set of information required for the MSFD process.
EMODnet Chemistry provides
aggregated and validated regional data collections for nutrients, dissolved
gasses, chlorophyll, and contaminants, properly visualized with OGC WMS and
WPS viewing services. Concentration maps with 10-year moving window from 1960
to 2014, by season and for selected vertical layers, are computed and made
available.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\newpage}?>
<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>The European Union has set the ambitious objective to reach within 2020 the
goal of Good Environmental Status (GES) for our oceans and seas. The
challenge consists in facing the environmental degradation caused by years
of unsustainable and inefficient growth model. The Marine Strategy Framework
Directive (MSFD; European Commission, 2008) adopted in 2008, with its 11
descriptors and related indicators, represents the legislative framework and
the backbone of this work. MSFD defines the GES in Article 3 as “The
environmental status of marine waters where these provide ecologically
diverse and dynamic oceans and seas which are clean, healthy and
productive”. GES means that the different uses made of the marine resources
are conducted at a sustainable level, ensuring their continuity for future
generations. Going more in detail for the restoration and the safeguard of
this status, the ecosystems (including their hydro-morphological, physical,
and chemical conditions) should be fully functioning and resilient to
human-induced environmental change, the decline of biodiversity caused by
human activities should be prevented, and biodiversity should be protected. The
human activities (introducing substances and energy) should not cause
pollution effects and noise from human activities should be compatible with
the marine environment and its ecosystems.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>Geographic coverage of EMODnet Chemistry partnership. Logos indicate
the nationality of the partner institutes.</p></caption>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017-f01.png"/>

      </fig>

      <p>This process is at the moment  halfway between the adoption (2008)
and its deadline (2020). The main features of this strategy are the
ecosystem approach (to provide an integrated evaluation of the activities
affecting our seas) and the common efforts required by the member states for
the cooperation between neighbouring countries.</p>
      <p><?xmltex \hack{\newpage}?>Some efforts have already been undertaken by European member states which
provided in 2012 the initial assessment on the state of the environment of
the national marine waters. This assessment reported on environmental status
determined in a holistic way, according to 11 descriptors, and on the
objectives and targets to reach GES following the articles 8, 9, and 10 of
the MSFD.</p>
      <p>The results of the first phase allowed us to recognize gaps and needs in data
availability, large heterogeneity of methodological approaches to report
information, and spatial inconsistency within member states regarding
coastal–offshore data. These outcomes clearly indicated that more efforts
are urgently needed if the EU wants to reach its goal. More has to be done in
regards to cooperation and especially the integration between member states
and regional sea conventions (RSC). The report from the commission on the
first phase of implementation of MSFD indicates a high level of heterogeneity
among member state reports and in several cases poor data availability and
accessibility (Dupont et al., 2014; Palialexis et al., 2014).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Density and distribution of water body phosphate harvested stations</p></caption>
        <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017-f02.png"/>

      </fig>

      <p>As a consequence, evaluation at higher level (regional and EU) is difficult
to perform. This first phase of MSFD implementation has somehow brought
Europe one step closer to the ecosystem approach. However, the recognized
gaps in data and information and the high heterogeneity in assessment
approaches should encourage the stakeholders involved in MSFD implementation to
develop a more homogeneous approach. In light of the revision of the
assessment in 2018, several efforts are required to overcome the
shortcomings identified in the first reporting phase. Going more in detail,
the actions should be focused on different aspects like revised criteria
for GES, methodological standards and standardized methods for monitoring,
assessment and data availability, and implementation of integrated information
systems at regional and EU level.</p>
      <p>In the field of marine research, during the last decades several
oceanographic data management initiatives faced the challenge of data
availability, interoperability, and resilience at pan-European level (EU MAST
MTP II MATER 1996–1999, EU MAST-INCO MEDAR 1999–2001, FP6 SeaDataNet 2006–2011, FP7 SeaDataNet2 2011–2015).</p>
      <p>Interoperability is defined as “the ability of a system to work with or use
the parts of another system”, while resilience is defined as “the ability
of a system to cope with change”. The translation of these principles in the
oceanographic data management consists in the development of a long life
system able to easily interact with other systems. As example the adoption
of common formats for data and metadata and a system of common vocabularies
ensure that the network of involved persons is working in a homogeneous
environment from the syntactic and semantic point of view (speaking a common
language). The resilience is safeguarded by metadata and quality flags that
provide clear knowledge of which kind of information the users are handling
even long time after the data measurement (e.g. use of historical data for
time series studies).</p>
      <p>Since 2007, the Directive establishing an Infrastructure for Spatial
Information in the European Community (INSPIRE, European Commission, 2007)
has been the driving principle to ensure that the European spatial data
infrastructures are compatible and usable in a transnational context. The
directive requires that common implementing rules are adopted for the
organization, accessibility, and sharing of spatial information with a focus
to the implementation of interoperability of spatial datasets and services.
Marine data management communities, developed in the framework of European
initiatives such as the abovementioned MATER (1996–1999) and
MEDAR (1999–2001) that converged later in the SeaDataNet (2006–2015)
experience, faced the challenge to provide access to the huge amount of
already existing but fragmented and inaccessible data collected by EU
oceanographic institutes. This was done developing a system able to collect,
standardize, quality control (QC), and share the information, taking into
proper account the data policies.</p>
      <p>The simple but efficient idea was the active collection of the EU
oceanographic data at national level carried out by a network of National
Oceanographic Data Centres (NODCs). The collection of those data was done in
direct communication with the data originators to ensure the best set of
measured data and related metadata. Metadata, which are all the information
needed to describe exhaustively the data, reply to a set of basic but
fundamental questions – who, where, when, what, and how – about the
collected information. For this reason they are key elements to enable
efficient browsing and discovering.</p>
      <p>Between the data collection and sharing, the crucial steps to ensure
interoperability and reliability consist in standardization and QC.</p>
      <p>The standardization is done at two main levels by following the
interoperability principles provided by INSPIRE: syntactic and semantic. The
first is done providing common formats for the files providing metadata and
data (XML ISO, ASCII). The second is done by means of a set of common
vocabularies that let to “use the same language” to describe data and
metadata over time, different projects, and nationality.</p>
      <p>The QC procedures provide the necessary labelling to complete
the harvested information with the evaluation of their reliability.</p>
      <p>Finally the registered users can access the needed information according to
data access and usage policies defined in agreement with the originators.</p>
      <p>In order to extend this approach to different disciplines of the marine
environment, at EU level, the Directorate-General for Maritime Affairs and
Fisheries (DG-MARE) launched in 2009 a set of thematic contracts to
establish a European Marine Observation and Data Network (EMODnet). The aim
of the initiative was to improve the availability of high-quality marine
environmental data at the scale of regions and sub-regions of the Marine
Strategy Framework Directive to build a knowledge base that can assist in
the implementation of marine policies and drive sustainable development. The
EMODnet lots with their infrastructure could play a central role
specifically for countries where the RSC are less
mature to support the need of qualified and standard information at
national, regional, and bigger scales.</p>
</sec>
<sec id="Ch1.S2">
  <title>Background</title>
      <p>A pilot project was launched by DG-MARE in 2009 to create the components of
the European Marine Observation and Data Network (so called ur-EMODnet), as
proposed in the EU Green Paper on Future Maritime Policy (European
Commission, 2006), consisting of six thematic data portals managing data on
bathymetry, marine geology, chemistry, biology, seabed habitats, and
physical oceanography. Based on the successful experience of the SeaDataNet
project (7th Framework Program), EMODnet Chemistry adopted its
approach (Vinci et al., 2013). The principle was to take advantage of its
efficient and distributed infrastructure for the management of data deriving
from in situ and remote observation of seas and oceans. This infrastructure
can be considered a European de facto standard, as it already involves around
100 institutes (nodes) from 35 countries and is adopted and continuously
adapted according to specific requirements for chemical data management.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>Data policy for nutrients and contaminant data.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017-f03.png"/>

      </fig>

      <p>SeaDataNet is actively involved in the development of standards that follow
the INSPIRE implementing rules to ensure interoperability such as
<list list-type="bullet"><list-item>
      <p>common metadata standards based on the Extensible Mark-up Language (XML),
based on ISO 19115/19139 schema;</p></list-item><list-item>
      <p>standard data transport formats Ocean Data View (ODV) ASCII, MEDATLAS and
NetCDF (CF);</p></list-item><list-item>
      <p>common QC methods and quality flag scale;</p></list-item><list-item>
      <p>common Vocabulary Web services, used to mark up metadata and data, covering
a broad spectrum of disciplines and governed by an international board
(SeaVox);</p></list-item><list-item>
      <p>SOAP Web services for various communication tasks;</p></list-item><list-item>
      <p>Open Geospatial Consortium (OGC) compliant services (Web Map Service, Web
Feature Service, Web Processing Services) for viewing services of data
products.</p></list-item></list>
The partnership involved a subgroup of the SeaDataNet network of NODCs with specific experience in data
collection, in data analyses, validation, and creation of products and in
the technical partners who further developed SeaDataNet infrastructure. The
Chemistry Pilot project was focused on the collection and management of data
on some chemical parameters relevant for the MSDF (contaminants and
fertilizers), in three matrices (sediment, seawater, and biota) and in three
areas of interest: the North Sea, the Black Sea, and some spots in the
Mediterranean Sea.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Number of stations for the parameters with more
data available.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Parameter</oasis:entry>  
         <oasis:entry colname="col2">No.</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Phosphate concentration parameters in the water column</oasis:entry>  
         <oasis:entry colname="col2">305896</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Nitrate concentration parameters in the water column</oasis:entry>  
         <oasis:entry colname="col2">262378</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Silicate concentration parameters in the water column</oasis:entry>  
         <oasis:entry colname="col2">245755</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Dissolved oxygen parameters in the water column</oasis:entry>  
         <oasis:entry colname="col2">198357</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Ammonium and ammonia concentration parameters in water bodies</oasis:entry>  
         <oasis:entry colname="col2">188666</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Nitrite concentration parameters in the water column</oasis:entry>  
         <oasis:entry colname="col2">181642</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Salinity of the water column</oasis:entry>  
         <oasis:entry colname="col2">151969</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Chlorophyll pigment concentrations in water bodies</oasis:entry>  
         <oasis:entry colname="col2">145374</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>The comparison of the harvested data between sea basins highlighted a highly
heterogeneous situation according to the different parameters. Data
distribution consisted, on one hand, in coastal time series stations
monitored at regular temporal scale and, on the other hand, in data homogenously
distributed at basins level, but discontinuously in time. Furthermore, high
heterogeneity in data managed resulted in the different sampling and
analytical protocols adopted, as well as in the different target species. As
a last step of the pilot project data visualizations were provided as
interpolated maps when data were homogeneously distributed in time and space
and as time series plots to allow visualization of data with fragmented
spatial coverage. The viewing products were made available on the dedicated
web portal in OGC compliant format (WMS layers).</p>
</sec>
<sec id="Ch1.S3">
  <title>EMODnet</title>
      <p>The positive outcomes from the pilot project confirmed the interest in the
further development of a marine observation infrastructure able to provide
data and knowledge required to support the development of marine economy
whilst supporting environmental protection needs, as underlined in the Green
Paper Marine Knowledge 2020 (European Commission, 2012). The new phase
includes data collection for all European sea-basins, the Baltic Sea, the
northeast Atlantic Ocean, the Mediterranean Sea, and the Black Sea, and
involves 46 partners (Fig. 1), from both research institutes and national
monitoring agencies.</p>
      <p>Data managed by EMODnet now include also silicates, chlorophyll, partial
pressures of dissolved gases (oxygen and carbon dioxide), plastics
(polyethylene, polypropylene) and acidity (pH, <inline-formula><mml:math id="M1" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>CO<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, total inorganic carbon,
alkalinity).</p>
      <p>Data collection and product generation for all European basins is carried
out by five regional leaders, responsible for the North Sea, the Baltic Sea,
the Atlantic, the Mediterranean, and the Black Sea.</p>

      <?xmltex \floatpos{h!}?><fig id="Ch1.F4"><caption><p>Temporal distribution of nutrient data, spanning from 1900 to 2016
(counting 90 profiles in the current year; updates May 2016).</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017-f04.png"/>

      </fig>

      <p>In order to better tune EMODnet efforts for the requirements of the MSFD,
several initiatives have been carried out to strengthen the dialogue with
the RSC and the Marine Observation and Data Expert
Group (MODEG) and a MSFD–EMODnet coordination group involving RSC, member states, and relevant stakeholders has been
established jointly by DG Mare and DG Environment. In addition, regular meetings
with INSPIRE implementing groups are organized to discuss on the most
feasible and useful products and services to provide.</p>
</sec>
<sec id="Ch1.S4">
  <title>Data collection and access</title>
      <p>Data harvesting is a fundamental activity of EMODnet and it is carried out
by the network of NODCs that supervise the national availability of research
and environmental monitoring data provided, respectively, by research
institutes and environmental agencies (Fig. 2). NODCs maintain regular
contact with data originators collecting and enriching data with the best
set of relevant metadata to ensure the reliability of the information. NODCs
are also responsible for the first QC of data, flagged with
quality information.</p>
      <p>Data access is regulated by a data policy (defined in agreement with data
originators) which aims to establish a balance between the right of the
originator to get proper acknowledgment for data acquisition and the need
for open access through free and unrestricted exchange of data, meta-data,
and data products. The analysis of data policies for EMODnet Chemistry data
shows differences between data access restrictions for nutrients and
contaminants (Fig. 3).</p>
      <p>Data requests from registered users are handled by NODCs through a data
policy management system. Unrestricted data are freely available while
restricted data need negotiation with data originators. This kind of filter
on data access is an effective way to establish contacts and trust between
data originators and data management centres, ensuring correct
acknowledgement, which ultimately encourages data sharing.</p>
      <p>By maximizing the availability of data to a larger community, SeaDataNet
promotes the use of these data, thereby ensuring that their maximum value
can be realized and thus contribute to increase knowledge of the marine
environment. Figure 4 shows temporal distribution of nutrient data, spanning
from 1900 to 2016; Table 1 shows the number of stations for parameters with
more data available.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Data validation loop.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017-f05.png"/>

      </fig>

      <?xmltex \floatpos{h!}?><fig id="Ch1.F6" specific-use="star"><caption><p>Ten-year average of water body phosphate concentration
(<inline-formula><mml:math id="M3" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol P L<inline-formula><mml:math id="M4" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) in the surface layer for all EU sea basins
(years 2003–2013). Interpolated maps can be selected from the Ocean Browser
viewing service interface with the following steps: choose “Select data
products” button, scroll and choose in the pop-up window from the list of
available products, and then select “Add layer” in the lower left corner of
the pop-up window. Maps can also be downloaded in different formats obtaining
results as in this example (PNG file).</p></caption>
        <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017-f06.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p>Screenshot from the web portal showing the time series dynamically
plotted and visualized thanks to the OGC WPS services.</p></caption>
        <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://nhess.copernicus.org/articles/17/197/2017/nhess-17-197-2017-f07.png"/>

      </fig>

</sec>
<sec id="Ch1.S5">
  <title>Data quality</title>
      <p>The quality of the data is a key issue when merging heterogeneous data
coming from different sources, periods, and geographic areas. Within EMODnet
Chemistry community, commonly agreed and standardized data QC protocols have been defined (Holdsworth, 2010) to guarantee consistency
among comprehensive databases which include data from different and/or
unknown origin and covering long time periods. As a first step, the data are
checked and completed by collators with a standard set of metadata that
provide the basic information necessary for their long-term use. Afterwards,
data undergo a validation loop which consists in several validation steps.
The first is done by data collators, prior to the inclusion in the
decentralized infrastructure, and the second step, which consists of regional
quality control, is performed at regional scale on aggregated datasets. The
first QCs ensure that position and time of data are
realistic and compare measurements with broad ranges and specific regional
ranges. Whenever available, data are also compared with climatology. As a
result of the first QC step, all data are archived with a quality flag value
that provides information about their reliability.</p>
      <p>At this point, data aggregation and regional QC are performed
at regional scale, following a common protocol. Data aggregation is done
with the objective to unify the various analytic terms into a unique
aggregated term with conversion to a unique measurement unit. The ODV
software has a built-in aggregation procedure applying a number of business
rules like possible units conversions. (Lowry  et al., 2013)</p>
      <p>The main goal of this activity is to obtain a harmonized dataset (e.g. a
unique dataset of phosphate concentration in the water column starting from
different datasets of phosphate concentration expressed with different
units) that could be used to generate homogeneous data products. The results
of the regional QC are sent to the data collators (NODCs) to
correct errors or anomalies in the original copy of the data available in
the EMODnet infrastructure. This feedback loop guarantees data quality
upgrade (Fig. 5).</p>
      <p>To improve and homogenize the QC procedures and standards adopted (at least
at regional level), a QC survey has been carried out within EMODnet Chemistry
community, in order to collect the best practices in data validation and
highlight gaps of the different institutes involved (Vinci et al., 2015).</p>
</sec>
<sec id="Ch1.S6">
  <title>Data products</title>
      <p>In order to accomplish the Marine Strategy Framework Directive requirements,
EMODnet Chemistry developed products suitable to visualize the time
evolution of a selected group of measurements and to calculate spatially
distributed data products specifically relevant for MSFD descriptor 5
(eutrophication), 8 (chemical pollution), and 9 (contaminants in seafood) as
typically done with satellite data (Colella et al., 2016; Gohin et al.,
2008)</p>
      <p>The interpolated maps have been produced with the Variational Inverse Method
(VIM; Brasseur et al., 1996), using the software DIVA (Data-Interpolating
Variational Analysis; Troupin et al., 2010). DIVA is an appropriate
numerical implementation of VIM suitable for oceanographic data spatial
analysis as it is designed to obtain a gridded field from the availability
of non-uniformly distributed observations (Barth et al., 2010; Troupin et
al., 2012).</p>
      <p>Interpolated maps are now generated, mainly for nutrients, with 10-year
moving window in order to find a balance between the duration of the
environmental evaluation cycle for member states (to provide maps with a
time frame near to the 6-year process of the member states' evaluation) and
the number of years that guarantee a sufficient data coverage.</p>
      <p>An example of a visualization useful for the assessment of eutrophication
and in particular of nutrient concentration in the water column is presented
in Fig. 6, which displays surface distribution of phosphate concentration in
spring for the decade 2003–2013 (centred in 2008).</p>
      <p>Profiles and time series plots are automatically generated from the regional
aggregated and validated datasets (called regional buffers), thanks to a
service based on WPS OGC standard, and can be dynamically customized
(Fig. 7).</p>
      <p>There are ongoing efforts to develop a more efficient information management
thanks to a system of data buffers hosted in a cloud system. Data are
harvested and validated in buffers and are then used for product generation.</p>
</sec>
<sec id="Ch1.S7" sec-type="conclusions">
  <title>Conclusions and perspectives</title>
      <p>EMODnet is a long-term marine data initiative developed through a stepwise
approach aiming to ensure that European marine data will become easily
accessible, interoperable, and free of restrictions on use. EMODnet Chemistry
started in 2009 to fulfill EU Marine Strategy Framework Directive
requirements for the assessment of eutrophication and contaminants,
following EU INSPIRE Directive rules (European Commission, 2007).</p>
      <p>With the start of EMODnet phase II, DG MARE and DG ENV started a
coordination table to agree on a joint process and to identify how EMODnet
can best contribute in practical terms to the MSFD. EMODnet Chemistry
implemented a set of recommendations, in communication with RSCs contracting parties. The situation is not homogeneous in
EU sea basins. While much of the chemistry and contaminant data are well
organized within OSPAR Commission and Helsinki Convention (HELCOM), namely
in the North Sea and Baltic Sea, respectively, EMODnet Chemistry has a more
useful role in the Mediterranean where these outputs are less well
organized. A Memorandum of Understanding with the Commission on the
Protection of the Black Sea against Pollution (Bucarest Convention) is under
preparation to formalize the cooperation in terms of providing dedicated
access to EMODnet Chemistry regional products for supporting management of
MSFD indicators as well as increasing participation in the advisory groups
meetings. A similar step is under discussion with the Information and
Communication Regional Activity Center (INFO-RAC) through the United Nations
Environmental Programme, Coordinating Unit for the Mediterranean Action Plan
for the Barcelona Convention (UNEP/MAP).</p>
      <p>These on-going efforts show the importance of EMODnet Chemistry results and
the extensions that might be planned in view of the last EMODnet
implementation phase aiming at a full resolution.</p>
      <p>In the next years, EMODnet Chemistry could play an important role in the
European environmental reporting landscape with two main tasks. The first
task consists in providing standardized and quality-checked buffers of data
for specific Regions. The second task is to act as an umbrella providing
standards, best practices, and infrastructure to aggregate at regional level
the single member states.</p>
</sec>
<sec id="Ch1.S8">
  <title>Data availability</title>
      <p>Data presented in the paper are available, according to specific data
policies (defined in agreement with data originators), at
<uri>http://www.emodnet-chemistry.eu/data_access.html</uri>. Aggregated data
products (GIS layers) are public domain and freely available for all users.
They are generated by EMODnet Chemistry under the support of DG MARE Call for
Tenders 2008/03 and 2012/10.</p>
</sec>

      
      </body>
    <back><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p>This work was supported by DG MARE, Call for Tenders 2008/03 and 2012/10.
Authors acknowledge the contribution of the whole EMODnet Chemistry
partnership, involved in the technical infrastructure development, in marine
chemical data gathering, harmonization, standardization and quality control, and
in data products preparation, as well as all data
providers.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: I. Federico<?xmltex \hack{\newline}?> Reviewed by: two
anonymous referees</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bib1"><label>1</label><mixed-citation>Barth, A., Alvera-Azcárate, A., Troupin, C., Ouberdous, M., and Beckers,
J.-M.: A web interface for griding arbitrarily distributed in situ data based
on Data-Interpolating Variational Analysis (DIVA), Adv. Geosci., 28, 29–37,
<ext-link xlink:href="http://dx.doi.org/10.5194/adgeo-28-29-2010" ext-link-type="DOI">10.5194/adgeo-28-29-2010</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib2"><label>2</label><mixed-citation>Brasseur, P., Beckers, J. M., Brankart, J. M., and Schoenauen, R.: Seasonal
temperature and salinity fields in the Mediterranean Sea: Climatological
analyses of a historical data set, Deep-Sea Res. Pt. I, 43, 159–192,
<ext-link xlink:href="http://dx.doi.org/10.1016/0967-0637(96)00012-X" ext-link-type="DOI">10.1016/0967-0637(96)00012-X</ext-link>, 1996.</mixed-citation></ref>
      <ref id="bib1.bib3"><label>3</label><mixed-citation>Colella, S., Falcini, F., Rinaldi, E., Sammartino, M., and Santoleri, R.:
Mediterranean Ocean Colour Chlorophyll Trends, PLoS ONE, 11, e0155756,
<ext-link xlink:href="http://dx.doi.org/10.1371/journal.pone.0155756" ext-link-type="DOI">10.1371/journal.pone.0155756</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bib4"><label>4</label><mixed-citation>Dupont, C., Belin, A., Moreira, G., Vermonden, B., Cochrane, S., Wilson, L.,
Emblow, C., Kater, B., Des Clercs, S., Parr, W., Le Visage, C , Green, N.,
Cools, J., and Thomsen, F.: Article 12 Technical Assessment of the MSFD 2012
obligations Mediterranean Sea, Contract No. 070307/2012/634823/SER/D2 – Task
F, 41 pp., 2014.
 </mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bib5"><label>5</label><mixed-citation>
European Commission: Green Paper – Towards a future Maritime Policy for the
Union: A European vision for the oceans and seas, COM (2006) 275 final,
Volume II – ANNEX, 49 pp., 2006.</mixed-citation></ref>
      <ref id="bib1.bib6"><label>6</label><mixed-citation>
European Commission: Directive 2007/2/EC of the European Parliament and of
the Council of 14 March 2007 establishing an Infrastructure for Spatial
Information in the European Community (INSPIRE), 14 pp., 2007.</mixed-citation></ref>
      <ref id="bib1.bib7"><label>7</label><mixed-citation>
European Commission: Directive 2008/56/EC of the European Parliament and of
the Council of 17 June 2008, establishing a framework for community action in
the field of marine environmental policy (Marine Strategy Framework
Directive), 22 pp., 2008.</mixed-citation></ref>
      <ref id="bib1.bib8"><label>8</label><mixed-citation>European Commission: Green Paper – Marine Knowledge 2020 – 45 from seabed
mapping to ocean forecasting, COM (2012) 473 final, <ext-link xlink:href="http://dx.doi.org/10.2771/4154" ext-link-type="DOI">10.2771/4154</ext-link>,
23 pp., 2012.</mixed-citation></ref>
      <ref id="bib1.bib9"><label>9</label><mixed-citation>Gohin, F., Saulquin, B., Oger-Jeanneret, H., Lozac'h, L., Lampert, L.,
Lefebvre, A., and Bruchon, F.: Towards a better assessment of the ecological
status of coastal waters using satellite-derived chlorophyll-<inline-formula><mml:math id="M5" display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula>
concentrations, Remote Sens. Environ., 112, 3329–3340, 2008.</mixed-citation></ref>
      <ref id="bib1.bib10"><label>10</label><mixed-citation>Holdsworth, N.: EMODnet Chemistry QC and QA basic guidelines, 11 pp.,
<ext-link xlink:href="http://dx.doi.org/10.6092/3cb41f4c-c401-45a7-ab32-0abd373e03bb" ext-link-type="DOI">10.6092/3cb41f4c-c401-45a7-ab32-0abd373e03bb</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib11"><label>11</label><mixed-citation>
Lowry, R., Leadbetter, A., and Vinci, M.: Semantically-enhanced Aggregation
of SeaDataNet Data, Boll. Geof. Teor. Appl., Vol. 54 Supp. (2013), IMDIS 2013
International Conference on Marine Data and Information Systems, 23–25
September 2013, Lucca (Italy), Book of Abstracts, 49–51, 2013.</mixed-citation></ref>
      <ref id="bib1.bib12"><label>12</label><mixed-citation>Palialexis, A., Tornero, V., Barbone, E., Gonzalez, D., Hanke, G., Cardoso,
A. C., Hoepffner, N., Katsanevakis, S., Somma, F., and Zampoukas, N.:
In-Depth Assessment of the EU Member States' Submissions for the Marine
Strategy Framework Directive under articles 8, 9 and 10, Report EUR 26473 EN
EU, JRC-IES, 149 pp., <ext-link xlink:href="http://dx.doi.org/10.2788/64014" ext-link-type="DOI">10.2788/64014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib13"><label>13</label><mixed-citation>Troupin, C., Machí n, F., Ouberdous, M., Sirjacobs, D., Barth, A., and
Beckers, J. M.: High-resolution Climatology of the North-East Atlantic using
Data-Interpolating Variational Analysis (Diva), J. Geophys. Res., 115,
C08005, <ext-link xlink:href="http://dx.doi.org/10.1029/2009JC005512" ext-link-type="DOI">10.1029/2009JC005512</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib14"><label>14</label><mixed-citation>
Troupin, C., Barth, A., Sirjacobs, D., Ouberdous, M., Brankart, J. M.,
Brasseur, P., Rixen, M., Alvera-Azcárate, A., Belounis, M., Capet, A.,
Lenartz, F., Toussaint, M. E., and Beckers, J. M.: Generation of analysis and
consistent error fields using the Data Interpolating Variational Analysis
(DIVA), Ocean Model., 52–53, 90–101, 2012.</mixed-citation></ref>
      <ref id="bib1.bib15"><label>15</label><mixed-citation>
Vinci, M., Giorgetti, A., and Brosich, A.: New EU efforts to assess the state
of the marine environment: the Emodnet Chemistry pilot project, Boll. Geof.
Teor. Appl., Vol. 54 Supp. (2013), IMDIS 2013 International Conference on
Marine Data and Information Systems, 23–25 September 2013, Lucca (Italy),
Book of Abstracts, 121–122, 2013.</mixed-citation></ref>
      <ref id="bib1.bib16"><label>16</label><mixed-citation>Vinci, M., Giorgetti, A., and Lipizer, M.: EMODnet Chemistry 2 Quality
Control inventory, 74 pp.,
<ext-link xlink:href="http://dx.doi.org/10.6092/97a6685c-99f3-4986-8285-f711e4101a99" ext-link-type="DOI">10.6092/97a6685c-99f3-4986-8285-f711e4101a99</ext-link>, 2015.</mixed-citation></ref>

  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>The role of EMODnet Chemistry in the European challenge for Good Environmental Status</article-title-html>
<abstract-html><p class="p">The
European Union set the ambitious objective to reach within 2020 the goal of
Good Environmental Status. The European Commission (2008)
represents the legislative framework that drives member state efforts to
reach it. The Integrated Maritime Policy supported the need to provide a
European knowledge base able to drive sustainable development by launching in
2009 a new European Marine Observation and Data Network (EMODnet). Through a
stepwise approach, EMODnet Chemistry aims to provide high-quality marine
environmental data and related products at the scale of regions and
sub-regions defined by the Marine Strategy Framework Directive. The chemistry
lot takes advantage and further develops the SeaDataNet pan-European
infrastructure and the distributed approach, linking together a network of
more than 100 National Oceanographic Data Centres providing data from more
than 500 data originators. The close interaction with EEA, RSCs, ICES and EMODnet–MSFD coordination group facilitated the identification of the most appropriate set of information required for the MSFD process.
EMODnet Chemistry provides
aggregated and validated regional data collections for nutrients, dissolved
gasses, chlorophyll, and contaminants, properly visualized with OGC WMS and
WPS viewing services. Concentration maps with 10-year moving window from 1960
to 2014, by season and for selected vertical layers, are computed and made
available.</p></abstract-html>
<ref-html id="bib1.bib1"><label>1</label><mixed-citation>
Barth, A., Alvera-Azcárate, A., Troupin, C., Ouberdous, M., and Beckers,
J.-M.: A web interface for griding arbitrarily distributed in situ data based
on Data-Interpolating Variational Analysis (DIVA), Adv. Geosci., 28, 29–37,
<a href="http://dx.doi.org/10.5194/adgeo-28-29-2010" target="_blank">doi:10.5194/adgeo-28-29-2010</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>2</label><mixed-citation>
Brasseur, P., Beckers, J. M., Brankart, J. M., and Schoenauen, R.: Seasonal
temperature and salinity fields in the Mediterranean Sea: Climatological
analyses of a historical data set, Deep-Sea Res. Pt. I, 43, 159–192,
<a href="http://dx.doi.org/10.1016/0967-0637(96)00012-X" target="_blank">doi:10.1016/0967-0637(96)00012-X</a>, 1996.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>3</label><mixed-citation>
Colella, S., Falcini, F., Rinaldi, E., Sammartino, M., and Santoleri, R.:
Mediterranean Ocean Colour Chlorophyll Trends, PLoS ONE, 11, e0155756,
<a href="http://dx.doi.org/10.1371/journal.pone.0155756" target="_blank">doi:10.1371/journal.pone.0155756</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>4</label><mixed-citation>
Dupont, C., Belin, A., Moreira, G., Vermonden, B., Cochrane, S., Wilson, L.,
Emblow, C., Kater, B., Des Clercs, S., Parr, W., Le Visage, C , Green, N.,
Cools, J., and Thomsen, F.: Article 12 Technical Assessment of the MSFD 2012
obligations Mediterranean Sea, Contract No. 070307/2012/634823/SER/D2 – Task
F, 41 pp., 2014.

</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>5</label><mixed-citation>
European Commission: Green Paper – Towards a future Maritime Policy for the
Union: A European vision for the oceans and seas, COM (2006) 275 final,
Volume II – ANNEX, 49 pp., 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>6</label><mixed-citation>
European Commission: Directive 2007/2/EC of the European Parliament and of
the Council of 14 March 2007 establishing an Infrastructure for Spatial
Information in the European Community (INSPIRE), 14 pp., 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>7</label><mixed-citation>
European Commission: Directive 2008/56/EC of the European Parliament and of
the Council of 17 June 2008, establishing a framework for community action in
the field of marine environmental policy (Marine Strategy Framework
Directive), 22 pp., 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>8</label><mixed-citation>
European Commission: Green Paper – Marine Knowledge 2020 – 45 from seabed
mapping to ocean forecasting, COM (2012) 473 final, <a href="http://dx.doi.org/10.2771/4154" target="_blank">doi:10.2771/4154</a>,
23 pp., 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>9</label><mixed-citation>
Gohin, F., Saulquin, B., Oger-Jeanneret, H., Lozac'h, L., Lampert, L.,
Lefebvre, A., and Bruchon, F.: Towards a better assessment of the ecological
status of coastal waters using satellite-derived chlorophyll-<i>a</i>
concentrations, Remote Sens. Environ., 112, 3329–3340, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>10</label><mixed-citation>
Holdsworth, N.: EMODnet Chemistry QC and QA basic guidelines, 11 pp.,
<a href="http://dx.doi.org/10.6092/3cb41f4c-c401-45a7-ab32-0abd373e03bb" target="_blank">doi:10.6092/3cb41f4c-c401-45a7-ab32-0abd373e03bb</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>11</label><mixed-citation>
Lowry, R., Leadbetter, A., and Vinci, M.: Semantically-enhanced Aggregation
of SeaDataNet Data, Boll. Geof. Teor. Appl., Vol. 54 Supp. (2013), IMDIS 2013
International Conference on Marine Data and Information Systems, 23–25
September 2013, Lucca (Italy), Book of Abstracts, 49–51, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>12</label><mixed-citation>
Palialexis, A., Tornero, V., Barbone, E., Gonzalez, D., Hanke, G., Cardoso,
A. C., Hoepffner, N., Katsanevakis, S., Somma, F., and Zampoukas, N.:
In-Depth Assessment of the EU Member States' Submissions for the Marine
Strategy Framework Directive under articles 8, 9 and 10, Report EUR 26473 EN
EU, JRC-IES, 149 pp., <a href="http://dx.doi.org/10.2788/64014" target="_blank">doi:10.2788/64014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>13</label><mixed-citation>
Troupin, C., Machí n, F., Ouberdous, M., Sirjacobs, D., Barth, A., and
Beckers, J. M.: High-resolution Climatology of the North-East Atlantic using
Data-Interpolating Variational Analysis (Diva), J. Geophys. Res., 115,
C08005, <a href="http://dx.doi.org/10.1029/2009JC005512" target="_blank">doi:10.1029/2009JC005512</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>14</label><mixed-citation>
Troupin, C., Barth, A., Sirjacobs, D., Ouberdous, M., Brankart, J. M.,
Brasseur, P., Rixen, M., Alvera-Azcárate, A., Belounis, M., Capet, A.,
Lenartz, F., Toussaint, M. E., and Beckers, J. M.: Generation of analysis and
consistent error fields using the Data Interpolating Variational Analysis
(DIVA), Ocean Model., 52–53, 90–101, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>15</label><mixed-citation>
Vinci, M., Giorgetti, A., and Brosich, A.: New EU efforts to assess the state
of the marine environment: the Emodnet Chemistry pilot project, Boll. Geof.
Teor. Appl., Vol. 54 Supp. (2013), IMDIS 2013 International Conference on
Marine Data and Information Systems, 23–25 September 2013, Lucca (Italy),
Book of Abstracts, 121–122, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>16</label><mixed-citation>
Vinci, M., Giorgetti, A., and Lipizer, M.: EMODnet Chemistry 2 Quality
Control inventory, 74 pp.,
<a href="http://dx.doi.org/10.6092/97a6685c-99f3-4986-8285-f711e4101a99" target="_blank">doi:10.6092/97a6685c-99f3-4986-8285-f711e4101a99</a>, 2015.
</mixed-citation></ref-html>--></article>
